HsaINT0108177 @ hg38
Intron Retention
Gene
ENSG00000145555 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr5:16683880-16685831:-
Coord C1 exon
chr5:16685738-16685831
Coord A exon
chr5:16683936-16685737
Coord C2 exon
chr5:16683880-16683935
Length
1802 bp
Sequences
Splice sites
5' ss Seq
GTGGTACGG
5' ss Score
6.61
3' ss Seq
TACTTTTTGTTCTTTTCCAGGGC
3' ss Score
11.41
Exon sequences
Seq C1 exon
CCAGTGGTTCAGCGTGCTGAGTCAGGTCCACGCGTCCACGGACCAGGAGATCCAGGAGATGCATGATGAGCAGGCAAACCCACAGAATGCTGTG
Seq A exon
GTACGGGAGCACTGTGTGGGATGGGGGTGGGGCGTCTAGGGGCAGGGACGGGGAGGGCGTCAGGATGGTAAAAAAGGGAAAGATTGGGAATTTCCAGACAGTCTTTTTTTAAAAGGTAAATATAGAATAATTAAGGAGAAAAACAGGACCATTTGAGTTTAGAATCAATACAATAATAAATATAATAAGTGGTACAATATAATACAATAATAAATACAGTAAATTAAGTTGGACACTGTGGCTCATGCCTGTAGTCCCAGCACTTTGGGAGGCTGAGGTGGGAGGATCATTTGAGGCCAGGAGTTCAAGACCAACCTGAGAAACATAGCAAGACACTGCCTCTATGAAAAAAATTAAAAATTATCCAGGCATGGTATTATGGGCCTGTAGTCCCAGCTACTTGGCAGGCTGAGGCAGGAGGATTGCTTGAGCCTGAGAATTCGAGGCTACAGTGAGCTATGATTGCGCCACTGAACTCCAGCAGCCTGACCCTGTCTCCTAAAAAAACAAACAACAAAAACGAATAAATTACAGAAGGTTGTAAGTAGTAATACATTCCAGTTCTCTCACCTCAAACCTTTAAAAGAACAAAAGAAATAATCCTACTTTTTATGAAGTCACGGAAGTACACATCACACTTACTCTTCAGAGGACTTGGTGAAATCTAAATTGTATTCTTATTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCACCCAGGCTGAAGTGCAGTGGCGAGATCTCAGTTCACTGCAACCTCCGCCTCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCTTGCCGCCACACCCGGCTAATTTTTTGTATTTTAGTAGAAACAGGGTTTCACTATGTTGCCCAGTCTGGTCTGGAACTCCTGAGCTCAGGCAATCCACATGCCTCAGCCTCCCAAAGTGGTGATACAGGCGTGAACCACTGTGCTGGGCCGAAATCCAAATTGTATTCTTTGTCTTCCCTCTATCCCAGACACAAAGTTACAAAACCCTGCTTTGGAAACCAAGTTTTATTTCCTCATCAGAAAATCTTGAAATAAAGTTTCTTAGGAGAAGAAGTGTAAGATTTAATTAAAGGACACAATATAATCAGGAAATTTGTACTATTGAAAGAAGGTCATAAACACTGTTCACTGAACATATTTTAAGAATAAGAGGGGCCAGGTGCGGAAGCTCAGACCTGTAATCCCAATACTTTGGGAGGCCAAGGCGGATGGATCACTTGAGGCCGCCAGGAATTTGAGACCAGCCTGGCCAACATGGCGAGACCCCATCTCTACTAAAACACAAAATTATCCAGGTGTGGTGGCCCACACCTGTAGTCCTAGCTACTTAGGAGGCTGAGGCACGAGAATCACTTGAACCTGGAAGGCAGAGGTTGCGTTGAGCTGAGATCACACCATTGCGCAGCCTGGGCAACAGAGTGAAACTCTGTTTCAAAAACAAACAAATTAAATTAAAATAGAGGTACTTGTAGAAAACTTAGTTAAAATATTTTTAAAAACAAAGAAATAAATTATTGAAAGGTTAAGAGGTAATGATTAACTTGTAATTTTAAAAAATAAATGGCCTATAGATTCTGCTCCGTGTAGAGGCTATTTGTACTCACACAACAGAGGAGTCGTCTCATAGATAACTATTATTTTGAAGTTAAAAAGAAAAGAGCCTTTTCTGTCTGATTGGGAGTTGTGGGCTAGAGGTATTACTGTAGTGTGCACCCTACTTTAGTGCTTCTCTCATTCTGTTTACTTTTTGTTCTTTTCCAG
Seq C2 exon
GGCACCTTGGATGTGGGGCTGATTGATTCTGTGTGTGCCTCTGACAGCCCTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145555:ENST00000513610:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(11.2=34.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development