DreINT0100278 @ danRer10
Intron Retention
Gene
ENSDARG00000017004 | myo10
Description
myosin X [Source:ZFIN;Acc:ZDB-GENE-070912-277]
Coordinates
chr2:42773380-42773639:-
Coord C1 exon
chr2:42773546-42773639
Coord A exon
chr2:42773436-42773545
Coord C2 exon
chr2:42773380-42773435
Length
110 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
CGTGTTTTCTTTTTTTATAGGGA
3' ss Score
10.76
Exon sequences
Seq C1 exon
TCATTGGTTCAGCGTGTTGAGTCAGGTGCACATGTCAACAGAACAGGAGATTCGAGAGATGCACGATGAACAAGCTAATCCTCAGAATGCTGTG
Seq A exon
GTAAGTATTATATATATAAACCCACCGCAAAATTGATCTACAACAAGATGTCTGTTCACATTTATTTATAAGCTATTTAGAAAAGAGTTTCGTGTTTTCTTTTTTTATAG
Seq C2 exon
GGAACTTTGGATGTAGGAATGATTGATTCTGTATGTGCCTCTGACAACCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017004:ENSDART00000140159:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(11.2=34.4),PF0016924=PH=PU(23.9=53.1)
A:
NA
C2:
PF0016924=PH=FE(25.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTCAGCGTGTTGAGTCAG
R:
CTTTCTGGGTTGTCAGAGGCA
Band lengths:
146-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]