GgaINT1018605 @ galGal4
Intron Retention
Gene
ENSGALG00000012954 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr2:75618414-75619296:+
Coord C1 exon
chr2:75618414-75618507
Coord A exon
chr2:75618508-75619240
Coord C2 exon
chr2:75619241-75619296
Length
733 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
GCTTGGGTATTTGTTTACAGGGT
3' ss Score
6.06
Exon sequences
Seq C1 exon
CCAGTGGTTTAGCGTTCTGAGTCAAGTCCATGCATCCACTGAGCAAGAGATCCGAGAGATGCACGATGAGCAGGCAAACCCACAGAACGCTGTG
Seq A exon
GTAAGTCAACGTCTGATGAACTTTTCAGAGCAAATATTTTCAGAAAAAAAGGGACACTGGTGGCTGCAGCTTCTGACAGTCACCACCTACACTTCCTTAAATGCAGTGATAGCCGGGACACTGGCTATAGAGGCTCCATGTCATAGGCCCTGTACCTGTACAACAGGAGAGGCTGATATCCCTCCCCATCTCTGTCATTCACCTCAATGAAAAATGAGCACTGGTTTCCTTTTTCCTTTGGTCCAGTTGTTTGCCACATCACAGTGTACAGTTGCGTTTGAAGCCTTGCAATGGTACAGTTAATGAGCAAATTAAAAAACAAGGAGTAAAAAGTTTGAGATTACCTTGGTCCTGCGTTTGCCATTCTTTACAAGTTCACAATTTAGGTGATAAATTTGGAAGCTACTCTCAGGCAAAGGGAAATAAAACTTCTTCAAAAGGATGCCATTTATGTGGGTGGCACTTTTAGGACAGAACTTTAGGCAGATTTGGAAAAAGTAGAAGAGGAAGAGCAGTTTCTGAGCTGCCTCTGGCTTAACTGGAGATAATCTCTTACTGAATCTGAGTATCCAAGTCTTCCCCTCACTTACATGGTTAGGAGAAACTGATGCCCAAATCTGCAGGTTTTGCTTGATCAAGGCTGCTGCTTCTTTCATATGTCTCTGAGTAAAGTACTGTGAGTAATGCAATAGTAAATGTCTTCCTACTTTTCTGCTTGGGTATTTGTTTACAG
Seq C2 exon
GGTACACTCGATGTAGGATTGATTGATTCTGTCTGTGCCGCTGATAATCCAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012954:ENSGALT00000021128:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(11.2=34.4),PF0016924=PH=PU(25.0=56.2)
A:
NA
C2:
PF0016924=PH=FE(25.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]