BtaINT0097982 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015527 | MYO1D
Description
myosin ID [Source:HGNC Symbol;Acc:HGNC:7598]
Coordinates
chr19:17778048-17782897:+
Coord C1 exon
chr19:17778048-17778143
Coord A exon
chr19:17778144-17782780
Coord C2 exon
chr19:17782781-17782897
Length
4637 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TTTCCTGTTTTCATTCCCAGTCG
3' ss Score
10.12
Exon sequences
Seq C1 exon
CTGCTGCAAGGAGGTTCGGACCAGATGCTACGTTCTCTGCACCTCCAGAAATCCTTGTCATCCTACAGCTACATCCATGTTGGAGCCCAGCTAAAG
Seq A exon
GTAAGCGTTTCCTTTTTGAGATGATTCAGATATAGAATCAAAGAATCAGAAGGGACATTAATTAATTATCGGTTTCAGCCTGCCACCTTAAGGCAAATGAATGACTCTTTTATTCTATTTTTAAAATTCTCTAGGACAGAGATTCAATGTATTATTGATGCAACAACTTTGCTTAATAACCCATTACTATATTTTATCACCATCTGACAGGAAAGAAGTTTTTCTCTTGTGATCTTGTGGGGTTTTTTGTTTTTAATTTTTAATCCCATTCCTTTTATTTTGACCCTCTAAAAGCATTGTTTCAAGTAGGAAATCCACTGCAAAAGAAGTAGGATATGATTTGGCCAAAGGCAAGTTGTTATAACAAAAGAAAGCTGAAAAGCACTGTGGTTGAAAAATATCAAAGATCGCCATTCATTCGTTTTTCAAATCATGATTTTGATGAAATAGTTTTGTGATCCTTGGAGCATTTCTATTCAGCTTTCACATTTTCCCCCTTCCCTTGCATGTAAAGCCCTCGCACACACGTAACACCGATCCTTTTGCCCTTTGGTTTCTAATTCGTGTTCTGCTATACATCTAACTTCTGCTAGCCAATTTGTAGCTAATCCTAATAATATAGTGATTTGCCAATGGTAGGTTATAAAAGAGTAATTATAGTTTCATTGGGGAAGGTGTATAAATACATGAAATAAGATCCGAAGGGAAATAGACCAGGGTTTACTTGTTTACTCTGGGTATATAAAGTTATACATACTTGGGTTCTTCTGCTTTTTCCATATTTAATATTTCTTCTATAATTAAAGATGCATTGCATTTGTAGTTTGGGGAGAAAATAAAACACTTTATAAAAGGAAAGAATCCAAGATGTGGGAAGCATGTCTTTTTTTCAAATTCTTTGCAATTCATCTTAAGCTAATTATACCTGTATTAGTGGTTTTAGCGATATTTTTATTATCACACATATAAATAAATGATATTTAGGGTTTTGCAATCAGTTTTCCATTGTTTGACATTTAAGTTGCACAAGTTTTATACTTTTATTGTCATCCAAGAACAGGATGTTTGGCTGAAAATTAATTGGAAGCAAGCAAACAAAAGAGGGCAACACCCCAACTTTTTTGAGAATAGGTCAGAGGTACTTCAAAATGTATAAAGGATTGTAAAATCAACACTTAAAAGAACAGTGACTGAAAATATTCTTTTTAAATCAAATTGTCTCGTTGACCTAGTGACTCTTGACTGGGTCATGTAAAGCACCCACAAAAAGCAAATATTAAATGAACATTAAGTCTTTTCTTCAACACTAAATTTACCTTAGGTTCCCTTTTCATCAACAATTTTCATTCCTATTCCTTCCCTTCCTTTTTTTTCTGCCCAATAAAAACCAAGAAGTAATATATGATCATAGTCAAAACCTAAAATAAAGATGAACCAAAAGGAAATTAAAATATACTAAAGCTCACCTTTCAGAGATAATTATTGGTAACAGCAGTATATATATGTATATATTTATATATGGAATCATACAATAAATCCTAATTAAGTAAACCTTTTATTAAATTATAATATAATCATTAATATCTTTCTATGTAAACAAATATAAATTAATAGAACAGTTTTAATAACTATGAAGTATTACTCTCTATGTTTCATAACTTAGCCATCCTAAAATGTAGGACTCATGTACAATTAAGATACTGTGGGTTACAGGTAAGACCCAATTAAAAGTCTCCAAAAACAATAAGGAACTTGATTATATCATAACAAGAAGCCCTAGGATGGGGCAGTTCCAGAGTTGGTTAATTGAGTGCCTTAACAATGTCAGTAAGAGACCCAGATGCTTGTTTGTTTCTCCAACTTACAGTTTTGCCATCCTCACTGGATTTGGCTGGTCTGCTTAAGCTGATTTTCCTCATGGTCCCAAAATGGCAGTGGCAATTCCAGCAGTCACGGGCAGAGAAAATGCTCCTGGCCACAACCCTTGATAAGCTAGGGAAGCCTCATGTCTTATGGGCCAGAATGGCTTCTCATGCCCATGACTGACCAATCACTTGGTTAGGGGAAAAAGATCCCTGTGATTAGTTTAGACCAATGAAGATTTACCTCCTAAGGTGAGGGGAAACCAGTCCTGAAGAACACATGCCCTTGGCGAGGGGTGAACAAATCAGAGTTTCATCAGTAGGAAAGAAGTAGAGCTGGAAAATGCCCCTTGGGTAGGCAGCCGACAGTTCCCCTCAGTAGGACATGTAGACTTCCTGTCTGGTTTCTCTGCAGTTTCAACACTGTTGCGGCTTTTGATAATAATAATCTGATAGTTGGGGGCTTTCACTGTGCTAGGAACTGTTGTTCAGTTGCTAAGTTGTGTCCGACTCTTTGCAACCCGGTGGACTGCAGCACGCCAGGCTTCCCTGTACTTCACTATGTCCTGGAGTTTTTCAAATTCATGTCCACTGAGTCAGTAATGCTACCTACCTATCTCATTTTCTGCCATCTTCTTCTGCTTTTGTCTTCGATCTTTCCCAGCATCAGGGTCTTGGGAAAGACTGAAGGCAAGACCCATATATAAAGGGAGTTGCTGTATGTAAATTCTCATTTCCTTCTCCAATAGCCATGTAAGAAAGGTACCATTATGCCCTTTGTCCCCATGAGGAAATTGAGCCTCAACAAAGTTAAGCATCTTAGAGAGCTGGAACGGGGAAGAGTTTGCCTGGTTGAGTCCTGGAATTAAAGGAACACGTGCTCATCAGGCAGAGGGGACCCCTTCCTCTGATCTTCCTCAGCAGGTGAGCATCAGGCCAGGTCTCTGTCCCAGCCAAGGCAGAAACTCACCGAGGAAAGATTGGACTCCCCGCAGCCACTGCTTTGGAAAAACTCCTAGGATGGGCAGTTACCATTGCTTTACTGTGAATTTTATTGACACCCTTTTATTTCCAATGGGCTACAGACCAAGGCAAGCAATTAGTCTTTGAACCCTTGTCTTAGTCTAGTTGGGTTGCTACAACAAAAATACCATAAGCATATGAGAAATGTTGATTTCTCATAACTCCGGAGGCTGGGGAGCCCAAGATCAAGGCCCCAGCAGAGTCTGTGTCCACTTTGTGGTTCAAGGGTGGTGCCTTCTTGCCATGGCCTCACAGGGCAGAAGGACCAGGGATCTGTCAGCTTAAAAAGATGCACAACATGAGAATTGTGAGTTAAGTTCTATCTGGGCAAAATGAGGACCGCCTCCCAGGAGATAGCTCTGAGAAGCTGCTCCGAGGAGGTAGTAGGGGAAGGTCAGTATCTTACAAAAGGTTTTCTGCTGGTCACGAGGAGCTGATGTCACCATGAAGGGTTTTAGTGCTTCTCTTTGATGTGAGGAGATGCAACGATTGGGATCATGAAATCAGCTCCTGAAAATAACTATGTAAAGACCTGTTCCACCAATTTCCCTGGAGCATAAGGTGCCCCATCCCTGTTGTCCACCCTGAACTCCCTTCAGGGCATGGCAGAGGTCAACAGCTGCAGCTGTGCAGAGTTCAGTCCGCACAGAGGCAGATGGCAGAGGCCCTCCCTTGGCAAGCACCAATTTCTCATTGACAGACCTCTGGGGTCTCTTTTCTAAGGGTACCCAGCCGAACATGAGGGCTTCATCTCCAAGACCTGATCACCTCCCAGAGGCTCCATCCCTAACACCATCACCTTGAAGGCTAAGATTTCAACATATGAACTTGAGTGTGAGGTACTCAAGGTGCTCAAGTAGCGGCCTGTGTGTGTGCTAAGTCCTTTCAGTCATGTCCAACTCTTTGTGACCCCATGGACTGTAGCCCACCAAGCTCCTCCATCCATGGGATTCTCTAGGCAAGAATACTGGAGTGGGTTGGCATGCCCTCCTCCAGGGGATCTTCCCAACCCAGGGACTGAACCCATGTGTCTTATGTCTCCTGCATTAGCAGGCGGGTTCTTTACCACTAGCACCGCCTGGGGAGCTCCCAGGAAACTCGGGGGAGAGATATAAACATTCCTTCTACAGGAACCCTCTTGTACAGCGAGAATCTCTGACATCCTGAATGCTTACAGAATGCTTGAAAAAGTGAGGTCATATTCCCGGACCGTTTCCCAGCTAGCCAAATGATCGAGGCAGGCCACTTGGCTTTTGGGGATGGGGTGGGGAGTGTTCTTCCTCACCTTTGAAGTAGGAAGCCTGACCAAACCAGCGTGGGAGCGTTGTTCCCAGCCTGGACAAGACTAATTGTGGAACCAAAAGCCACAGACGACAATAGCTAGGCATGTGTCTCGGAGGCTCCTTCAGTCAGAGTTTCCACTTGTGGTCTCACATCTCATGCCACTTCCTCCACTCATCCCAGAGCTTCTCTGAGCCAACTCAGGACTTGCTCCTTCACTGAAGCTTCCAGAGAAGTGCCTGGTGCTTATTATGAGAGACGGCGGCTCTCACACAGAAGTGGGCCTTGTGGGTGTTGCCTTATATCGCTACCCCTGAAATCATTGTATTTTCTCTGGATACTCCCCATCCCTTCAATGACTTACTCCAAAGGCATCAGGACCTTGGCTACACTTAAATTTAGTCTCCTGGTTTTGTATGTTAATGTTCAAATGAAATGTCTGTGACCTCGGTTTCCTGTTTTCATTCCCAG
Seq C2 exon
TCGTCTATCAATGATGCTGCAGAATTCAAAGTAGTAGCCGATGCCATGAAAGTAATTGGCTTCAAACCCGAGGAGATTCAAACAGCGTATAAAATCTTGGCTGCTATTCTTCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015527:ENSBTAT00000020634:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development