GgaINT0143033 @ galGal3
Intron Retention
Gene
ENSGALG00000000674 | MYO1D
Description
NA
Coordinates
chr27:1397698-1398676:+
Coord C1 exon
chr27:1397698-1397799
Coord A exon
chr27:1397800-1398559
Coord C2 exon
chr27:1398560-1398676
Length
760 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CAAACATCTCCTTCCTGCAGGGT
3' ss Score
10.2
Exon sequences
Seq C1 exon
ACCCAGCTCCTCCAGGGGGGGTCTGACCAGATGCTGCGCTCTCTACATCTGCAGAAGGATGCGTCTGCATACAGCTACATCTCTCCTGGAGCACAGCTCAAG
Seq A exon
GTGAGTGGCAGGAAACTCGTCTTAAGGTTGTAAATGCTTCTTACATGTTTGAATCACCGCTGAGCTAGCAGAGGTGGAGAGCAGTGTTATGGAAAGGTGACACTGCTACGCTGTTGTAGCAGAGCTCTGGACCTTGGGGATGATTGTGTATGAGCCTGGGCTCAGTGGTCTCTAGAGGTCCCTTCCAACCCCTATAGCTCTGTGTACTTGTGCACACTCCACACAGCAAGGCGTTGGCCACAAATGCACTGTGCTGGGCAGTACTCATGGGGTCTGTGACTGCACTGCTTGCTCTGTGTTTTATGAGCAGCAGCTGCCCTTCCACAGTAAATTCCACTGGGAAAGCACTGGGATGTGCAGATGTACAGCATGGCATTGGCATCAGTCAATCTCAGAGCAATTTTTTGCTTCTGAAAAATAGTGAATTACCTCTCTATTTCCTGTGGGCTGCAGAGTCTATGAATCATAGAATCATAGAATGGCCTGGGTTGAAAAGGAGCACAATGCTCATCCAGTTCCAACCCCCTGCTATGTGCAGGGTCGCCAACCAGCAGCCCAGGCTGCCCAGAGCTACTTCCAGCCTGGTCTTGAATGCCTGCAGGGATGGGGCATCCACAGCCTCCTTGGGCAACCTGTGCCAGTGCGTCACCCTCTGTGTGAAAAGCTTCCTCCTAATATCCAACCTAACCCCCCCCATCTCAATTTAAAACCATTCCCCTTTGCTTTCTCACTTTGTGTCCCAAACATCTCCTTCCTGCAG
Seq C2 exon
GGTTCCATCAACGATGGTGCCGAGTTCAAGGCTGTGGCTGATGCCATGAAGGTGATAGGATTCAAGCAAGAGGAGATTCAGACTGTCTACAAAATCGTGGCAGCCATTCTTCATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000674:ENSGALT00000000956:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGCTCCTCCAGGGG
R:
TGAAGAATGGCTGCCACGATT
Band lengths:
215-975
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]