HsaINT0108572 @ hg38
Intron Retention
Gene
ENSG00000176658 | MYO1D
Description
myosin ID [Source:HGNC Symbol;Acc:HGNC:7598]
Coordinates
chr17:32767636-32771220:-
Coord C1 exon
chr17:32771125-32771220
Coord A exon
chr17:32767753-32771124
Coord C2 exon
chr17:32767636-32767752
Length
3372 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TTTTTCATTTTCATCCCCAGTCT
3' ss Score
10.06
Exon sequences
Seq C1 exon
CTACTCCAAGGAGGTTCAGAACAAATGCTACGCTCTCTACATCTCCAGAAATCCCTTTCATCCTACAACTATATTCATGTGGGAGCTCAATTAAAG
Seq A exon
GTGAGAATTTCCTCTTTGAGATTGCTCCAATAGAAAATCAGTCAAAGGATTAGAAGAGACATTCAATAATTATCTGGTCAAGCCTGCTATCTTTAGGCAAATAAACATCTCTTTTATCCTGTTCTATTTTTTAAATTCTCAAGGACAGAGATTCAGCACATTTTTGAATCAACAACTTTGCTTAAAATCAATTATGATATTTTATCACCATCTGACAGGAAAGAAGTTTTTTCCTACATTCAATGTTTTATTTTAATTTTTAATCCTATCCCTATTCCGTTTATTTTCACACTATAAAAATATTGATAGGACTAGGAAGCCTACCTCCTAAGAAGATTCCATATGATTTGGCCAAAGGCAAGTTAGTAAGACAAAATTAAAATGCACTTTGATTCTCCACTCACTGTTTGTTCAAATGTTGATTTTGATGTACCCTAGAAATAATTTTGTGACCTTTGAGGCATTCCTATTCAGCTTTCAAGTTTTTCCATTTTTTCTCTTTTCTTGCATGCAAGCACTTGCATACACTTACATGCAGGCGTATTTTTGCTCTTTTATTTCTAGTTCATTTTATTTCTAGTTCATCTAGTAATTTTACAACTAATTATAATAATAGTTTGTTGATAATAGTTACACTATTATCCTATTTCGTAGGAGGGAAGGTATATAAATGCATATAATAAGATATGGTAGGATATAGATCACAGTATTAATTATTTATTCTAGATGGGTGAGATTATGGATATTTGTGTTCTGTTTTTCCTTATTTAAAAAAATTCTACATCAAAAACTTACTGCTTTCATATTTGGGGGAGAAATAAAAGAAACTGTAAAGGAAAAAGATCTAAGATATGGGAGCTATTTCTTTAAAAAATTCTATTAATCAAAATAAGCTAATTATACCTGCATTATTGGTTTAGCTGTATTTTTATTGCTGTGCATAGAAATTAATGATATTTTGGTTTTTGCAATTAATTTTCCATTATTTGACATTTAGGTTACAACAACTTTACTTTTATGGTCATCTGAGAGCGAGCAGGATGTTTGGCTGAAAATGAATTAAAAACAAAAAACAGTAGAGGGCAACACTCCACCTCTCTGAGAACTAGCCAGAGGCACTTAAAGAATTGTGAAATCAACACCTGGAAAGCCAGTGACTGGGAATGTTTGTTTTCAAATTGTCTTATCGACTAAGTTACTTTTGACCAAGTCGTGTAGAGTCCCCACAGAAAGCAAGTATTAAATTAATAGCCTTTTTTCTAGGTTAAATTTAGCTTAGATTCCCTTTTTATCAAAAATTTCCATGTCTGCTTTCCCCACCTTTTTTTTTTTGCTTCCTAAGAAAACAAAGAACTAATAAATGATCATAGTCAAAACCTAAACTATGAACCAAAAGGAAACAAAAATACACTAAATCTTACCATACAGAAATGATTATTGATAATGGTTTGCATCTATATTTATAAATGGAATCATACAATAAATCCTAATTAAATAAACCTGTTTTTATTATAATCTTTCCATGCAAACAAATATAAATTAATATAATAATTTTTATAACTATTAAGTATTGCACTGTGTGTATCTTAACCAGTTCTAAAATGCAGGAGTCATATACAGTTAAGATATTTTGGGTTGCAAGTAGGAGAAGACCCAATTAAAAGTCTCCAAAAACAATAAGAAACTTAATTATCTAGCATAACAAGAAACTCTGAGATAGGACAATTCCAGAATTAGTTAGTTCATTGCCTTAACAATGTTGTCAGGGACCCAGGTGTTTTTTTGGTTGTTTCCCCAACTTACAACTCTGCCACACTCATGGACAGCTCTGTCCTCTTAGGCTGGTTTTCCTTTTAGTCCCAAAATGTCATCAGAATTTCCAGGAGTCACCTGCAAAGGAGATGTTCATGGCATATGTCCTTTATAAGCTAGGGAAACCTCCCCAAGAACCCTCCTCCACTCATCCCCCATAAACACTTTCCCTCATGTTGTATTGATCAGAATGGCATCCCATGCCTGTGGCTAACCAGTCATTTAGTAAGGGAAATAAGATCACTCTGATGAGTTTAGACCAGTGAAGATTTACCTCTTGAGGCTAGGTAGATGCCAGTCACAAAGGACATGCACACTTAGAGAGGAGTAAACAAATCAGGGTTCGATTGGCAAGAAAGAAATGAGGGTAGAGGATGGCTGTTAGGTAAGCAGCCAACAGTTCCCCACAGTAGGACATTTAGATTTTATCCAGTTACTTTCCAACTTCAACATGGTTGCAGTTTATAATAATAGTAATATCTGATACTGCTGAGTGGTTTTTTTTTGTATGCTGGTGCTAGAGAGGTGCTTTATATAAATTTTCATTCAATTCTGACAACCACCCTGTAAGATATATGTTATTATGCCCATTTTATTTGTGAGGAAGTTGAGGTTCAATGAGGTTAAGTATCTTGTCCAAGGTAAAAACAAAAACCTAGGAGGAGGAGGGGCTGGCCTGGTTGTCTCCTGGACACTAGAGGAACTTGTACTCACCAGGCAGAGAGGTCCCCTTCCAGGGCCCTTCCTCAACAAGTGAGCATCAGGCCAGGTCTCTGTATCCAAACAAGAGGAGAAACTTACTGAGGAAAGAATTGGTCAAGCCTCTGCGGCTGCTGCTGTGGTAAAACTAATATAAGCAGTTACTATTGCTTTATTGCGAATTTCTGTTTACGCACTTGTATTTCCAATGTGATGGCCACAGCTCTAAAAGGGCAGGCGATTCATCTTTGAGCTGCCTGTACCAGTTAGTAGAGCTGACTTGTGAAATGCGTATCAAGTGAGTGAAAGAATGAAGTTATAGTCCCAGACTATTTAATAGCTTACTAAATGACTGAGGCTGGCTGTTTTGCTTTTGAGGGCCCGCCTTGCCTCACCTGGAAAATAAACCGCCTGATTATACGAGAGTGAAGTGTTGTTGCCAGCCTAAATAAGACAATTGTGGAACAAAGAGCCACAAACAACAGTAGCCAAGCATGTATCTTGGAGGCTCCCACATTCAGCACTTGCATTTGTGATCTCACATCCATGCTGTTGCCTTCACTGATCATGGAGTGGGGGATCAGCTTGTCTGAGCCAGCTCAGGACTTGCTCCCTCACTGAAGGTTCCAGAAAACGGCACAGTGCTTATTTTAGGTGATGGCTTTCACGCACAAGTGGGCTTTGTACGTGCTGAATAATGTTGCAACTCGTGAAATCATTTTTATTTTCTCTGGAGACTCACCATCCCCTCAAGTGATTTACTATGAAGGCAAAACCTTGGTATAACTTAGTTTTATAATTGTTGAATTTTAATGCTCATAGGAAATATCTGTAACTTCAGTTTTTCATTTTCATCCCCAG
Seq C2 exon
TCTTCTATCAATGATGCTGCCGAATTCAGAGTTGTTGCTGATGCCATGAAAGTCATTGGCTTCAAACCTGAGGAGATCCAAACAGTGTATAAGATTTTGGCTGCTATTCTGCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176658:ENST00000318217:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(19.5=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development