RnoINT0097082 @ rn6
Intron Retention
Gene
ENSRNOG00000003276 | Myo1d
Description
myosin ID [Source:RGD Symbol;Acc:621321]
Coordinates
chr10:68050093-68052983:-
Coord C1 exon
chr10:68052888-68052983
Coord A exon
chr10:68050210-68052887
Coord C2 exon
chr10:68050093-68050209
Length
2678 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
AGTTTTCTGTTCATGTCTAGTCT
3' ss Score
5.76
Exon sequences
Seq C1 exon
CTACTTCAGGGAGGTTCCGAGCAGATGCTGCATTCTCTACATCTGCAGAAATCACTCTCATCCTACAACTACATCCGTGTGGGGGCACAACTGAAG
Seq A exon
GTGAGCTTCTTCTGAGAACCAGGCCGAGGCAGAAGGAGCACAGGCTCTTGCCCAGGCCCTCCACTGCCCGCCCTCATGCAGATGAATGTTTCCTCTGCTCTGCTTTTAAAAACCTCAGTCCAAAATTTATTCCACCACTGGACTGAAAACCTGGCTAGCTAACCTTGCATAGCTGTAATGTCCTCATCTACCAGAAAAGCTCCTCTCTCTGTGTTCAGGGTTTTCTCTTACCATCTCTTAATATTTGATCTGACTATAAAAGTCACCGAGCACTAGCAAGCCTTCCTCGTAAGTTCGTGTGATTTAGTCAAAGGTGTGTTGTTATGACAAAACGAAATTGAAAAGCACTTTGATTTTCTCCTTTTTCTTTGTCTTTTGAGACAGATAGCCCTGGCTGTCCTAGAGCTCATGCCATAGACCAGGTTGGCCTTGAACTCAGAGATCCACCTGCCTCTGACTCCCAAGTTCTGGGATTAAAAGCATGTGCCACCACTGCCCAAACTCCCCTAGTTTAAAGTATTGATTGTGATTTTCCTCGGATAGTTTTGTGGCCTTAGGTTGCTTCTTTATAGTCACCTTTCTAAAGGGTGGGTGATAATTAGTAATGGTTTGTATGTCTATTCATTCATTCATAAACAAACCCTGCTTAAACCTACATTTATTATAATATAATCATTTCCCCCATACAAACAAATGATTTTAATGTCCATAAAGTATTACATGTATTTTAATTAATCTTAGAATGTAAGAGTCGTGTGAAATTAAGATACCTTGGGTCACAGGTAAGAGAAAATCTAGGTAAAGTTTCCCAAAGCAGTGATGAATTCGCTGACCCTGTATGACAGCAAGCACTGGGATGGTCAGACCCAGCACCTCAGCAGCACAGGTGGGGTTTGTGGTCTTGTAACTTACAGCTCTGCCACCCTCAGTAAACTGGCTTGTCCTCTTGCTCTGGCTTTTGCTGTGGTCTCAGAACATCAGCAGCAGTCCCAATATTCCCAGGCAAAGGAAATGCCACCTTGTACACACGTGCCTCCCTAGAAACCCTCGCCTTCCATAGCTCGTCATGTGCTTTTCCTCATGCCTCCTAGTTCACATTGGCATCACAGGCTTGTGACTGAGCACTCATTGGTAGGGGAAGAAATGGATGTCTTAGGGTTTCTGCTACTGTGATAAACCCCACGACCAAAAGCAACTTAAGGGGAGAAGGGATTCACTTCATCTTCCAGCTTGTAGTCCATCATCTGGGGAGTCAGAGGAAGTCAAGGCAGTACACATGGCCCAGAAGGGGTGCTGCTTACAGACTTGTTTTGCTCACCCAGCTTTCTTATATACCTCAAGGTCACCTGTCCAAGGGTGGCAACACCCACTTGTTGTGGAGGCTCTGCCTCCACAAATCAATCACTAATTAAGAAAATGCCCCACAGACTCCCTGCAGCCTGCTGTTCTGGAGGCATTCTCAATGGTGCTCCCTTTTCTGAGATAACCTAGCTTGTGTCAAGTTGACCATATACTAGCCATGATCACTTAGGAACCCTGAAGCCTCCTGAGACTAGGAGCAAGCCAGAGATGAGCTTGAAGAGGACTGAACAAATCTCATCCTATTAGCAATAATGAAATAAGAGACGAATGGCTGTTAGGAAAAACAGCCAGAAATTTCCTTGTATAAGGCAGAACTACAATCTTTACATGTAGTCATGATAGTAATATCTGATTTGAGTATTTTTGGTGTGCTAAGGACCAGACAACAACTTGTAAGAAATGTATTACTCTCTCCGTGTAATGCATGAGGAAATTAAGGCTCAATAAGGTTAAGCATCCATCCCATAGTGAGAAGACAGACAGGTGTAGGAGCTTGCCTGGTTGTGTCTATAACACAAAGGAACATGTGTTTTTCAAGCAGAGGTTTGTTTTGTATATCCTTCCTCAGTAAGCAAGCATCGGCCAGGACCCATATAGGTCAAATGAGCAACTTGTAGAGGAAAGGCTTAGTCCAGAGCTCCTTCCGGGAACCTTGTAGTATAAGCAGTTGCCATTTCTTACTGTAAAATCTGATGGCACACTGGTATATCCAACCCAATGTCCATGTCTCCTGGGGCTGCAATTCATCACTGAGCCCCTGTGCTCCAGTTAGAAGCTATGACTTCCCATCACTTGTCACATGAGAGAGATAATGGAGGGTAGTCCTGGACTTCTTAACAGCTTCCTACGTGACTGCAGCTGGTGGCTTTGCTCTGGGTGCTACGTTTCCTCCACCAGGACTCAGCCCGATTACAGCGTGAGAGCTGCTACCAGACTGCACAGAGGACCCAGGCGAGAGAGCTGCCAATGCGGTAGCCAGTCATGGACCTTAGAGTTCTTACATTTAACCTTTTCATGTGTGACATCACATCCCATGCCTTTGCCTCCAGGGAACATGGAGCTGTGATCTTCAGTGGTTCAACTCAGGACAGAACCTTCAGAAAAGTGCATGGCGCTTATTTTAAGTGACACAAATCTCACACACACACTTAGGGCTCATATTTCTAAACAACATTTCCAACACAAATTTATTTTTAATATGTGTCTCCCTTAAAACGATTTACTACAAAGGCATCAAGACTTTGGCCAAACACTTCAGCTTTTAGTTAATGCTCAGGTGAAATGTTTCTGACTTACAGTTTTCTGTTCATGTCTAG
Seq C2 exon
TCTTCCATCAATGATGCTGCAGAGTTCAAAGTTGTAGCTGATGCCATGAAAGTAATTGGATTCAAACCTGAGGAGATTCAAACAGTGTATAAAATTCTGGCTGCTATTCTTCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003276:ENSRNOT00000004609:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(11.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]