MmuINT0104214 @ mm10
Intron Retention
Gene
ENSMUSG00000035441 | Myo1d
Description
myosin ID [Source:MGI Symbol;Acc:MGI:107728]
Coordinates
chr11:80676822-80680115:-
Coord C1 exon
chr11:80680020-80680115
Coord A exon
chr11:80676939-80680019
Coord C2 exon
chr11:80676822-80676938
Length
3081 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
AGTTTTCTGTTCATGTCTAGTCT
3' ss Score
5.76
Exon sequences
Seq C1 exon
CTCCTCCAGGGAGGTTCTGAGCAGATGCTGCACTCTCTTCACCTGCAGAAGTCACTCTCATCCTACAACTACATCCGTGTGGGGGCACAGCTGAAG
Seq A exon
GTGAGTTTCTTCTCTGAGAACCAAGAGGAGGCAGAGGGAGCACAGGCTGCTCACCCCGGCCCTCTGCTGCCCCCACGCAGAGGAATGCTTCCTCTGCTCTGCTTTTAAAAATCTCAGGCCAAGATTTATTCCACCACCGGACTGAAACCCTGGCTAACTAACCTTGCATGGCTATACTGTCCTCATCTCACAGAAAAGTTCCTCTCTGTGTGCTCAGGGTTTTCTCTTAACATCTTTTAATATTTGATCTGACTCCATTTATCTGAAACCATAAAAACCACTGAGCACTAGCAAGCCTTCCTCATAAGAGTTTGTGTGATTTAGCAAAAGGTATGGTGTTATGACAAAATGAAGTTTTAAAGCACTTTGATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCTCTCCCTCTCTCCCTCTCTCCCTCTCTCCCTCTCTCTCCCTCTCTCCCTCTCTCTCCCGCTCGCTCTCACTCGCTCTCGCTCTCTTTCTCTCTCTCTCTCTTTCTCTCTTTATTTTGTCTTTCAAGACAGGTAGCCCTGGCTGTCCTAAAGCTCATGCTATAGACTAGGCTGGCCTTGAACTCAGAGATCCACCTGCCTGTGCCTCCCACGTGCTGGGATTAAAGGCGTGTGCCACCACTGCCCAGCCTCCACTATTTTAAAATATTGGTTATGATTATCCTAGAAACGGTTTTGTGGTCCTTAGGTTGTTCCTTTGTGTAATCTTTCAAAAGGACTCAAGATTTCCCTTCCCTTGCGTGCAATCTCTTGCATACACATCTGCAGGCCTGGTTAGCTCTTTATTTGAATTAGTTTTCCTCTAGTCATCTCATAGCCAGTTTAACAATGTGTTGGTTGAGGAGAGTGTATAAAAGGTAAATGTGTGTCGTGGTTCACTGGAGGGGGAGAATAGAAACGCAGAGAGTGCTATGGGAGGCTTGGATCACAGTTACTTCCAGGAGGGTAAGATGTGCATATTAGGGCCCTGCATTTCTGTATTTTTAACTTTTCTGTAATAAGAAGTACATTGCCAGCAGAGTACGGTAGCACACGTGGGTGACCGTAGTACCAAAGAGGGCGGGCGAGACAGAAAGATGATGACTGCACCTGGCTCACACAGCCAGACTGGCTCACACCAGAGAAGGCACTGGTGATTTTAGTTGGATGAAGAATAAAAAGATCTCTGACAGGAAAGGATGTGAGAAGTGTTTTTTTATTTAAATTATTATTTCACTTATGCTAGTGATACCATCATTACTGGCTTAGCAATATTTTTATTGCTGTTCAAAGAAGTAATTAATTTTCTCTTCCTTGGCATTTAGGTTTGCCACCCTTTTACACTTTTCTAAGAGCAGAAATGCTTGGCTGAAAATGAATTGAAAATTAAACAGAAAAAGGCAATACTCCAACTTTCTCTGCGTTGCTAGAAATACTTAAATATGTATAGAGTATTCTGAAATGAACACTTACAGCTAGCGACTGGGCTATTCCTCTGCAATAAGACCATCTTATTACCAAAATATTTTGTGTCAGGTCATGTAGCCTAATACTAAGTATTAAGTTAACATTTGAACTTCTTTATAAATAAAATTCATCTTTTGTACTGTCTTTATTTGTTTTCTATTTGGATTTTTCCCTTTCTTTCTGACAAATTATTTGCTCATAGTCAAAATCTAAGCTAGGGCTGGAGAGATGGCTCAGCAGCAAGGAGCAGGGACTGCTCTTGCAGAGAACCCTCATTTGATTCCCAGCACCTACATGGTGGCTCACAACCGTCTGTAAGTTCAGCACCAGAGGATCTGCTAGTCTCTTCTGGTCTCCATGGTATCAGGCACATGTGTGGTACACATCATATAACACAGGTAAAAAACCCATACACTTAATTTTAAAAAAGAAAATAGCCTAAGACATATGCTTAAGTCCTATTATGCAGATTATAGTTAGTAATGATTTGTATGTATATTCATTCATAAAAATCATACAACAAACCCTGCTCAAACCTACATTTATTATATACAATATAATTCTCCCATACAAACATAAATGATTTTAGTACCCATAAAGTATGACATGTATTTTAGTTAATAGTATGTAAGACTCATGTGAAATTAAGATATCTTGGGTCACAGGTAAGAGAAAATCTAGGTAAAGTTTCCCAAAACAGTGATGAATTCGCTGGCCCTGTATGACAGCAAGGGATGGTCATTTATAATGGCAATATCTGATATTTGAGTATTTTTTGGTGTGGTAAGGACCAGACAACAACCTGTAAGAAGTGTATTAATCTCTCCATGTTATTCATGAAGAGATTAAGGCTCAATAAGGTTAAGCATCCATCTCATAGTGAGAAAACACTGGCAGATGTAGGAGCTTGCCTGGTGGTGTCTACAACACAAAGAAACATGTACTCTTCAGGCAGAGGAGGTTTGTTTTGTATATCCTTCCTCGGTACGTGAGCATCAGGCCAGGGCCCCATCCAGGCATAATGAGCAGTTTGTTGAGAAAAGGCTTAGTCCAGAACTACTTTAGAGAAACGTGTAGTATAAGCAGTTGTCATTTTTTACTGTAAAATCTGGTGGCACACTGGGATATCCCAACCCAATGTCCGTGTCTCCTAGGGCTCCACATCCATCATTTAGCTCCTGTGCTCCAGTTCAAAGCTATGACTTCTTATCACTTATCACATGAGAGAAATGATGGGGTGTATAGCTCTGGACTACCTAACAGCCTGCTAAGTGACTTCAGCTGGTGGCTTTGCTCTGGATGCTGCTCTGGGTGCTGCTGGTGGCCTTGCTCTGGGTGCTGCTTTTCCTCTGCTGGGAACTAAGCCTGATGATACAGTGTGAGAGCTGCTGCCAGCCTGCACAGAGGGCCTGGAAGAGAGAGTTGCACAAATCTCACACACAAATAGGCCTCATATATCTAAACATTTTCAAAACAAAATAATGTTTTTAACATTTGTCTTCTTTAAAATGATTTACTACAAAGGCATCAAGACTTTGGCTAAGCACTTTGGTTTTGTAGTTAATGCTCAGGTGAAATGTTTGTGACTTACAGTTTTCTGTTCATGTCTAG
Seq C2 exon
TCTTCCATCAATGACGCTGCTGAGTTCAAAGTTGTAGCTGATGCCATGAAAGTAATTGGATTCAAACCTGAGGAGATTCAAACTGTGTATAAAATTTTGGCTGTTATTCTTCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035441:ENSMUST00000041065:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types