BtaINT0098040 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006377 | MYO1G
Description
myosin IG [Source:HGNC Symbol;Acc:HGNC:13880]
Coordinates
chr4:77324304-77324753:+
Coord C1 exon
chr4:77324304-77324474
Coord A exon
chr4:77324475-77324682
Coord C2 exon
chr4:77324683-77324753
Length
208 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCC
5' ss Score
5.77
3' ss Seq
TGTGCTGTCCCCATCCATAGCTC
3' ss Score
9.67
Exon sequences
Seq C1 exon
GTGGAGTACTTCAACAACGCCACCATCGTGGACCTGGTGGAGCGGCCCCACCGGGGCATCCTCTCTGTGCTGGATGAGGCCTGCAGCACTGCGGGCCCCATCACTGACCGGATCTTCCTGCAGACCCTGGACACACACCACCGCCACCACCCACACTATACTAGCCGCCAG
Seq A exon
GTGCCCCTCTGCCCCTGCGGTCTCCCCACCCTGTGCCCGTCCAGCTGGTCCCGGCACTGGCGGGCACCCCACGGTGCCACACTGCCTGTCTTGGGGTGGGTAGGGGGTCTTGGTGGTGGCTCAGCCTCCTCTGCAGGGCTGTCTCCCCTTTCTCCCCTAGATCCCCCCACACCTTCTAGGTCTTGACCTGTGCTGTCCCCATCCATAG
Seq C2 exon
CTCTGCCCCACAGACAAGACCATGGAGTTTGGCCGAGACTTCCGGATCAAGCACTATGCAGGGGATGTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006377:ENSBTAT00000008366:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACTTCAACAACGCCACCA
R:
GTGACATCCCCTGCATAGTGC
Band lengths:
238-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]