GgaINT1018678 @ galGal4
Intron Retention
Gene
ENSGALG00000005644 | MYO1G
Description
unconventional myosin-Ig [Source:RefSeq peptide;Acc:NP_001026132]
Coordinates
chr2:4042626-4042944:+
Coord C1 exon
chr2:4042626-4042796
Coord A exon
chr2:4042797-4042873
Coord C2 exon
chr2:4042874-4042944
Length
77 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATT
5' ss Score
5.88
3' ss Seq
TGACACCCTTTGCTCCCCAGCTC
3' ss Score
7.35
Exon sequences
Seq C1 exon
ATTGAGTACTTCAGCAACGAGCCTATCGTGGAGCTGGTGGAGCAGCCGCACCGTGGCATCCTGGCGCTGCTGGACGAGGCCTGCTTGGCTGTGGGGACCGTCACTGATGCCCTCTTCCTGGCCAACATGGATGCCCGCCTGGGCCACCACCCACACTACAGCAGCCGTAAG
Seq A exon
GTGATTTCTGGGGACAACAATGGGGATTGAGGTGGGGGGCGTGCCAGGAGCTGGCCCTGACACCCTTTGCTCCCCAG
Seq C2 exon
CTCTGCCCCACCGACAAGACCATGGAGTTTGACCGTGATTTCCGCATCAAACACTACGCCGGAGATGTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005644:ENSGALT00000009051:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTATCGTGGAGCTGGTGGAG
R:
AACTCCATGGTCTTGTCGGTG
Band lengths:
179-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]