DreINT0014962 @ danRer10
Intron Retention
Gene
ENSDARG00000036104 | MYO1G
Description
myosin IG [Source:HGNC Symbol;Acc:HGNC:13880]
Coordinates
chr19:25145914-25148501:-
Coord C1 exon
chr19:25148331-25148501
Coord A exon
chr19:25145985-25148330
Coord C2 exon
chr19:25145914-25145984
Length
2346 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
3' ss Seq
GTTTACTTTTTTCTTGTTAGCTC
3' ss Score
7.07
Exon sequences
Seq C1 exon
ATCGAATACTTTAACAATCAGATCATTGTGGATTTAGTGGAGCAGCCTCATAAGGGGATTATCTCTGTTCTGGATGAAGCCTGTCTCATTGCAGGGAAAGTCACAGATACAGTTTGCCTGGACAGCATGAACAAAAAGCTGGGCCAGCATCCTCACTACACCTCCCGGAAA
Seq A exon
GTAAGCACTCACTCTTTCATTATCATTGAGTGTAGTTATAAAGTAACTAGTAACTCTAATAAAACAACTTAACTGTTTTATGTTCAATCCACTTAAATTTGTTAAAAGAATTAAGTTAATTTAATCAATTTGTTTTATGACAATATGAAAGAAATTGTGTGGAACCCAGCATTTTTTACAGTGTAGTTTGTATAAATAGATTTAGAAAAGTTGAGATATATTTAGCAGATTAATTATACACTCGCTGGCCTTTTAATTAGGTACACCTGTCCAACTGCTGTTTAATGTAAATTTCTAATCAGCCAATCACATAGCAGCAACTCAATGAATTCGGGTATGTAGACATGATCAAGATGATCTGCTGCAGTTCATACCGAGCATAAAAATGGCGAAGAAAGGTGATTTAAGTGACTTTGAACGTGCCATCGTTGTTGGTGCCAGACAGGCTGGTCTGAGTATTTCAGAAACTGCTGCTCCACAGGGATTTTCACGCACAGCCATCTCTAGGATTTACAGAGAATGTTCTGAAAAAGAGAAAATATCCAGTGAGTGGCAGTTCTGTGGCCGCAAACACCTTGTTGATGCCAGAGGTCAAAACAGGAAACTGAGGCTACAATTCACAACAGGCTCACCAAAATTGGACAATAGAAGATTGGAAAAACCTCGCCTAGTCGGATGAGTCTCGATTTCTGCTGCAACATTTGGATTATAGGGTAAAAATTTGGCGTCAACAACATGAAAGCATGAATCCATCTTGCTATGCATCAACAGTTCAGGCTGCTGGTGGTGGTGTAATTGTGTTGGGGATTAGTACCAATTGAGCATCTTGTCAATGCCTTGAGCATTGTTGTTGACCATGTCCATGCCTTGATGACCACAGTGTACCCATCTTCTGATGGCTACTTCCAGCTGGATAACGTGCCATGTCATAAAGTGCGAATCATCTCAGACTGGTTTCTTGAACATGACAATGACTTCACTGTACTCAAATGGCATCCACAGTCACCATAACTCAATCCAATAGAGCACCTTTGGGATGTAGTGGAACGGGAGATTCACTTCATGGATGTGCAGCTGACAAATCTGCAGCAACTGCTTGATGCTATCATGTCAATTTGGAGCAAAATCTCTGAGGAATATTTCCAGTACTTTGTTGAATATATGCCATGAAGGATTAATGCAGTTCTGAAGGCAAAAGGGGGTCCAACCCGGTACTAGTGAGGTGTACCTAATAAAGTGACCGGTGAGTGTAAGCTATAGCTAAAACAAGTATAGCTAAATAAGATAACATTGATCAAGTTGACTACACAAGCTTTAAATAAAAATAGACATATTGAGATATATATTTTATATTTTTAAGTCAAGTTGAGCTTTATTGTCATTCCGCTACATGTTTGGACATACAGATGAACGAAATGTTGTGTCTCGCAGGACAACATTGCTACATAAATTATGCATAAATACAAACACAACTCTGGACGTAACAGCTATTTAAAAGAAACTATGCATAACTGCTATATTCTATAAGATACTTAACTATACAGATAAGACTGAGCAATGTTGTGCAAGATATTGTGCAAGAGAGGGTTAATATTAAAGGTTTAATATTGTGAAAAAAAGAGTTATTCAAGATGGAAGCAAGCAGTGCAACATGACGTGGTACATTTATAGTGAACATCGTTTTTCTAATTGAGTTTTTGTAAGTTGGAGTTTAGATAAAGTGTCAGGTGCAAATGAGAGAAGAGGGTTTCTACAGGTGGTTTGTTAAGCCCACTCACATCATTTTGCATTTTTTTGTTATTAATAATGCTAAATATGCACAATTACACATGATTAACTATCAATGAAGAAGGAAATTTGTCATTTCAAATTATATTATTTACATTATTTTGTATTTTTTTTAAAAAAAATCTAACTAAAATGTCAAAATGTCTTAAATTAAAAGAATTCAAATTAATTTAAATTCTATGCATTGAGATTTATATTCATGTAGTAAGTAGTATTAAGTCAAGTAATTAAATGTTTTAATAAAAAATTAAGTTACTTTTGATTTTATTGATGTAATTAGTAATTAATTACTTTTTGAAGTAAAGTCCTGCCTCAGCACTCCTCTAGTCACATCTTATCAACATTTGTTTGTAGGCCTGTCCTAAATTGTGAAGCAAAACGGCTTCCCTCTTTTGACCATACTTGTACAGTAGTTGCCTTAGTTGAACTGCACACTTCTGCATTGTGGCTGCAGGGTCAGAAGGTGGCAGTGCTCTTACACGTTATATTCATGTAATTACAAACACATGGAGTCCACGTTGATGTTTTGACCACTGAAGTTTACTTTTTTCTTGTTAG
Seq C2 exon
CTCTGTCCCGCTGACAAGACTATGGAGTTCAATCGAGATTTTCGTATCCGACACTACGCTGGAGATGTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036104:ENSDART00000142774:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]