HsaINT0108632 @ hg38
Intron Retention
Gene
ENSG00000136286 | MYO1G
Description
myosin IG [Source:HGNC Symbol;Acc:HGNC:13880]
Coordinates
chr7:44969413-44969875:-
Coord C1 exon
chr7:44969705-44969875
Coord A exon
chr7:44969484-44969704
Coord C2 exon
chr7:44969413-44969483
Length
221 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCC
5' ss Score
5.77
3' ss Seq
ACCTCAGCCTGTCCCCATAGCTC
3' ss Score
7.64
Exon sequences
Seq C1 exon
GTTGAGTATTTCAACAACGCCACCATTGTGGATCTGGTGGAGCGGCCCCACCGTGGCATCCTGGCCGTGCTGGACGAGGCCTGCAGCTCTGCTGGCACCATCACTGACCGAATCTTCCTGCAGACCCTGGACATGCACCACCGCCATCACCTACACTACACCAGCCGCCAG
Seq A exon
GTGCCCCCGGCTGTCCCAGTGCCACCACAGTGGGCTGGTGGGACCTGCCCCACAGGCACCATGCTGCCCATGCCTCGTGGGGCCTGGTTGGGGACCCAGCTTTGGTGCCATTGTCGTCACTGTGGCAACCTTCTCTGCCCTGGAGGTGGGGAGGCAGGGCTATCCCTTCATACAGACCCTCCACATACCTTTTGTGCCTTGACCTCAGCCTGTCCCCATAG
Seq C2 exon
CTCTGCCCCACAGACAAGACCATGGAGTTTGGCCGAGACTTCCGGATCAAGCACTATGCAGGGGACGTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136286:ENST00000258787:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTATTTCAACAACGCCACCA
R:
CGTCCCCTGCATAGTGCTTG
Band lengths:
236-457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development