RnoINT0097139 @ rn6
Intron Retention
Gene
ENSRNOG00000059140 | Myo1g
Description
myosin IG [Source:RGD Symbol;Acc:1306016]
Coordinates
chr14:86789845-86790305:-
Coord C1 exon
chr14:86790135-86790305
Coord A exon
chr14:86789916-86790134
Coord C2 exon
chr14:86789845-86789915
Length
219 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTTC
5' ss Score
1.16
3' ss Seq
TACCCTGGTCTGTCCCATAGCTT
3' ss Score
8.32
Exon sequences
Seq C1 exon
ATCGAGTACTTCAACAACGCCACCATTGTGGAACTTGTAGAGCAGCCCCGCCGAGGCATCCTGGCTGTACTAGATGAAGCCTGCAGCACGGCAGGCCCCATCACTGACCGGATCTTCCTGCAGACCCTGGACACACACCACCGCCACCACCCACACTATTCCAGCCGCCAG
Seq A exon
GTGTTCTCGCTGTCCCCCATGTTAGGGCAGCACAGAGGGCGGGTGGGACACACGGAGGAGTTCCGACGCTCAGGCCTCATGGGGTTCTTGGCCAACTTAGCCTGATAGCACTAAAGTCACAGTCACCTCTGTCCAGCAAAGGTGATCGTGGGATTGTCCCTTTGTGTAAACTACAAGGTTACTCCCATCGTCTGTGTCTTACCCTGGTCTGTCCCATAG
Seq C2 exon
CTTTGCCCTACGGACAAGACCATGGAGTTTGGCCGAGACTTCCAGATCAAACACTATGCAGGGGATGTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059140:ENSRNOT00000092021:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACTTCAACAACGCCACCA
R:
GTGACATCCCCTGCATAGTGT
Band lengths:
238-457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]