BtaINT0098042 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006377 | MYO1G
Description
myosin IG [Source:HGNC Symbol;Acc:HGNC:13880]
Coordinates
chr4:77326135-77326528:+
Coord C1 exon
chr4:77326135-77326209
Coord A exon
chr4:77326210-77326395
Coord C2 exon
chr4:77326396-77326528
Length
186 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CATGCGGCCTATGTCCACAGCAA
3' ss Score
7.3
Exon sequences
Seq C1 exon
GTACTCCGTGGAGGGCTTCATTGATAAGAACAGAGACTTCCTCTTCCAGGACTTCAAGCGTCTGCTGTACAACAG
Seq A exon
GTGAGGGGGGCTCTCTGGGCATGTGTGTGGATGCCAGACAGTGAAGGCCCAGGCACTCTGGCTGGAAGGGCCTTCAGACACTCGGTCTGACCCTCACAGCCCAAGGTCTTGAAGTTTACACATGGCCAAGCTTGGGTGGGGGCTGTCCTCCTGGAGGGCATCTGGGCATGCGGCCTATGTCCACAG
Seq C2 exon
CAAGGATCCCACCCTGCGGGCCATGTGGCCAGATGGGCAGCAGGACATCACAGAGGTGACCAAGCGCCCCCTGACGGCCGGCACACTCTTCAAGAACTCCATGGTGGCCCTGGTGGAAAACCTGGCCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006377:ENSBTAT00000008366:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCCGTGGAGGGCTTCATT
R:
CTTGGAGGCCAGGTTTTCCAC
Band lengths:
207-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]