HsaINT0108634 @ hg19
Intron Retention
Gene
ENSG00000136286 | MYO1G
Description
myosin IG [Source:HGNC Symbol;Acc:13880]
Coordinates
chr7:45007204-45007557:-
Coord C1 exon
chr7:45007483-45007557
Coord A exon
chr7:45007337-45007482
Coord C2 exon
chr7:45007204-45007336
Length
146 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
AATTCGGCCTGTGTCTGCAGCAC
3' ss Score
6.32
Exon sequences
Seq C1 exon
GTACTCCGTGGAAGGCTTCATCGACAAGAACAGAGATTTCCTCTTCCAGGACTTCAAGCGGCTGCTGTACAACAG
Seq A exon
GTGAGCACGGCTTGCTGGGCACCATAGGGAGGGCCAGGGCCCTGGGGCCCCAGAGACTCTGGGGTCAGGCATTGACTAGCGTCAGGACGTGGGTGGGTGGGGCTGCTCTCCCAGAGGATGGCTGGGAATTCGGCCTGTGTCTGCAG
Seq C2 exon
CACGGACCCCACTCTACGGGCCATGTGGCCGGACGGGCAGCAGGACATCACAGAGGTGACCAAGCGCCCCCTGACGGCTGGCACACTCTTCAAGAACTCCATGGTGGCCCTGGTGGAGAACCTTGCCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136286-MYO1G:NM_033054:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGAAGGCTTCATCGACAA
R:
CTTGGAGGCAAGGTTCTCCAC
Band lengths:
202-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)