RnoINT0097141 @ rn6
Intron Retention
Gene
ENSRNOG00000059140 | Myo1g
Description
myosin IG [Source:RGD Symbol;Acc:1306016]
Coordinates
chr14:86786975-86787498:-
Coord C1 exon
chr14:86787424-86787498
Coord A exon
chr14:86787108-86787423
Coord C2 exon
chr14:86786975-86787107
Length
316 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
3' ss Seq
AAAGCAGCATATGTCTTCAGCAT
3' ss Score
-0.63
Exon sequences
Seq C1 exon
GTACTCTGTGGAAGGCTTCATTGACAAGAATAGAGACTCTCTCTTCCAGGACTTCAAACGGCTGCTGTACAATAG
Seq A exon
GTGAGCATGGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCTCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAAAAAAAAAGAACAAAAAAAAAAAAGCAATGTCTGAAAAAAAAACAAAACAATAGGTGAGCATGGCTTGCTGGACCAGGATTGGGAATCTGCAGGGACTCTGGGGTTTAATCCCTACTTAACTCACAGACAGCTTGAAGTTCAAGACTAAAACTATGTAGCCATATTGGGTCAGGTGGGCTTTACCCTGCCAGGGTATCTGGGTAAAGCAGCATATGTCTTCAG
Seq C2 exon
CATGGATCCCACCTTGCGAGCCATGTGGCCAGACGGGCAACAGGACATCACAGAAGTGACCAAGCGCCCCCTGACAGCCGGCACACTCTTTAAGAATTCCATGATTGCCCTGGTGGAGAACTTGGCCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059140:ENSRNOT00000092021:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCTGTGGAAGGCTTCATTGAC
R:
TTGGAGGCCAAGTTCTCCACC
Band lengths:
206-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]