MmuINT0104276 @ mm9
Intron Retention
Gene
ENSMUSG00000020437 | Myo1g
Description
myosin IG [Source:MGI Symbol;Acc:MGI:1927091]
Coordinates
chr11:6412164-6412540:-
Coord C1 exon
chr11:6412466-6412540
Coord A exon
chr11:6412297-6412465
Coord C2 exon
chr11:6412164-6412296
Length
169 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
3' ss Seq
AATGTAGCATATGTCTTCAGTGT
3' ss Score
2.24
Exon sequences
Seq C1 exon
GTACTCTGTGGAAGGCTTCATTGACAAGAATAGAGACTCTCTCTTCCAGGACTTCAAACGGCTGCTGTACAATAG
Seq A exon
GTGAGCACAGCTTGCAGGGCCAGGATTAGACTCTTCAGGGACTCTGGGGTCTAATCCCTACTTAACTCACAGACAGCCTGAGGTTCAAGACTAAAACTATGTAGCTATATTGGGTCAGGTGGGCTTTGCCCTGCCATGGTATCTGGGTAAATGTAGCATATGTCTTCAG
Seq C2 exon
TGTGGATCCCACCTTGCGAGCCATGTGGCCTGACGGGCAACAGGACATCACGGAAGTGACCAAGCGTCCCCTGACAGCCGGCACACTCTTTAAGAATTCCATGGTTGCCCTGGTGGAAAACTTGGCTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020437-Myo1g:NM_178440:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGGAAGGCTTCATTGACA
R:
TGGAAGCCAAGTTTTCCACCA
Band lengths:
202-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: