GgaINT0097032 @ galGal3
Intron Retention
Gene
ENSGALG00000005644 | MYO1G
Description
NA
Coordinates
chr2:3960438-3960797:+
Coord C1 exon
chr2:3960438-3960512
Coord A exon
chr2:3960513-3960664
Coord C2 exon
chr2:3960665-3960797
Length
152 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGG
5' ss Score
5.26
3' ss Seq
CACACCAGCTCTGTCCCCAGCAT
3' ss Score
4.1
Exon sequences
Seq C1 exon
GTACTCCGTGGAGGGTTTCCTGGACAAGAACAAGGACACACTATTCCAGGACTTCAAACGGCTCCTCTACAACAG
Seq A exon
GTTGGGAACATCCAGGGACAGGGGACACAGCTAGGGGCTCGGGGACATGGCCAGGGAGACCCTGCTATGGGGTATAGGGCGGCAAAACTTGGGGCACTGGGGAGGTGGGGCAGTGCCCAGTACTGCCAGACCCACACCAGCTCTGTCCCCAG
Seq C2 exon
CATGGACCCTGTGCTGCGTGCCATGTGGCCCGATGGTGAGCAGAGCATCACTGAGGTCACCAAGCGCCCACTGACTGCCGCCACGCTCTTCAAGAACTCCATTGTGGCCCTGGTGGAAAACCTTGCCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005644:ENSGALT00000009051:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(13.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCCGTGGAGGGTTTCCTG
R:
CTTGGAGGCAAGGTTTTCCAC
Band lengths:
207-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]