BtaINT0098048 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006377 | MYO1G
Description
myosin IG [Source:HGNC Symbol;Acc:HGNC:13880]
Coordinates
chr4:77331275-77331698:+
Coord C1 exon
chr4:77331275-77331379
Coord A exon
chr4:77331380-77331584
Coord C2 exon
chr4:77331585-77331698
Length
205 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGAAACCACCCGTCCTACAGGTG
3' ss Score
8.2
Exon sequences
Seq C1 exon
GCCACAGACAACCCCACAGCCTCAGGCCTGTTTGCTCAGCGACTGAAGACGCTTCGGGAAAAAGACGGCTTTGGGGCCGTGCTCTTCTCCAGCCACGTCAGAAAG
Seq A exon
GTGAGCAGTGGGTTCAGGGCTGCTGGCTGATGACAGCCCTGGTTCAGGCCCAGCTAAGAGGTTTCACAACTACTCTTGAACTTCAAAAACTTCAGCTCCAACCCAGTTAGTGAGAGAATGGCTTCACAGAGGGGAGGCCTCCAGCCACACCTCCTGGGGAGCCCCCCCGGGCCAGGCAGTGACCCTGAAACCACCCGTCCTACAG
Seq C2 exon
GTGAATCGCTTCAACAAAAGCCGGGACCGGGCACTGTTGCTCACAGATCGGCACCTCTACAAGCTGGAGCCAGGCCGGCAGTACCGGGTGATGCGGGCCGTGCCCCTGGATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006377:ENSBTAT00000008366:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF060178=Myosin_TH1=FE(16.7=100)
A:
NA
C2:
PF060178=Myosin_TH1=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACAACCCCACAGCCTCAG
R:
CGCATCACCCGGTACTGC
Band lengths:
196-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]