RnoINT0097147 @ rn6
Intron Retention
Gene
ENSRNOG00000059140 | Myo1g
Description
myosin IG [Source:RGD Symbol;Acc:1306016]
Coordinates
chr14:86782591-86783022:-
Coord C1 exon
chr14:86782918-86783022
Coord A exon
chr14:86782705-86782917
Coord C2 exon
chr14:86782591-86782704
Length
213 bp
Sequences
Splice sites
5' ss Seq
AAGGTCGGT
5' ss Score
7.13
3' ss Seq
CTCAGGCGGCTTTTCCGCAGGTG
3' ss Score
7.04
Exon sequences
Seq C1 exon
GACACTGACAACCCCACAGCTTCCCATCTGTTCGCTGAGCAGCTAAAGGCACTTCGGGAGAAGGATGGCTTCGGAACCGTGCTTTTCTCCAGCCACGTGCGCAAG
Seq A exon
GTCGGTACTTGGCCTGGAGGTCATGGGGGACAAAGACTGGAGGGACTCAGCAGGGAGACCTGAGACAGCCTCTGCCTAGGTCTGGTTGCTTCTGATACTCTAGAAACGGCCATCCTTGGTCAGCCCGCGAGGAAAAAAAACAGAGAGGGAGGATTAGATGGGCCTGGAGAAGGATGGGGAGTACCAGCCTGGGCTCAGGCGGCTTTTCCGCAG
Seq C2 exon
GTGAATCGATTCCGCAAGCGCCGGGACCGGGCCCTTCTGCTCACAGACCGGCATCTCTACAAGCTGGAACCTGGACGACAGTACCGGGTGATGCGGGCTGTGCCTCTGGATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059140:ENSRNOT00000092021:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF060178=Myosin_TH1=FE(16.7=100)
A:
NA
C2:
PF060178=Myosin_TH1=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGACAACCCCACAGCTTC
R:
CGCATCCAGAGGCACAGC
Band lengths:
217-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]