GgaINT0097038 @ galGal3
Intron Retention
Gene
ENSGALG00000005644 | MYO1G
Description
NA
Coordinates
chr2:3962682-3963009:+
Coord C1 exon
chr2:3962682-3962786
Coord A exon
chr2:3962787-3962863
Coord C2 exon
chr2:3962864-3963009
Length
77 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CACTCAGCTCTGCCCTGCAGATC
3' ss Score
7.71
Exon sequences
Seq C1 exon
GCCAGCGAGAACCCAGGCTTGGCGCTGCCCTTCGCCCACCGTGTGCAGGCCCTACGTGACAAGGTGCACTTCGGCGCTGTCCTCTTCTCCAGCCATGTCCGCAAG
Seq A exon
GTGAGGAGCTCGGCACAGCCAGTGTATCCCCATTGGCATCCCCTGGCTCTGCCTCCTCACTCAGCTCTGCCCTGCAG
Seq C2 exon
ATCAACCGCTTCAACAAGAGCCGGGACCGGGCCATCCTGATCACCGACCAGCACCTCTACAAGTTGGAGCCCCGGAAGCAGTACCGGGTGATGCGGGAGCTGCCGCTCAGCATGGTCAGTGGCCTTACACCCACGTGGCAGCGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005644:ENSGALT00000009051:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF060178=Myosin_TH1=FE(16.7=100)
A:
NA
C2:
PF060178=Myosin_TH1=FE(23.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGTGACAAGGTGCACTTCG
R:
GTAAGGCCACTGACCATGCTG
Band lengths:
181-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]