HsaINT0108640 @ hg19
Intron Retention
Gene
ENSG00000136286 | MYO1G
Description
myosin IG [Source:HGNC Symbol;Acc:13880]
Coordinates
chr7:45003648-45004118:-
Coord C1 exon
chr7:45004014-45004118
Coord A exon
chr7:45003762-45004013
Coord C2 exon
chr7:45003648-45003761
Length
252 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
3' ss Seq
TCCAGCCACCTCTCCCACAGGTG
3' ss Score
9
Exon sequences
Seq C1 exon
GCCACTGACAATCCCACAGCATCAAGCCTGTTTGCTCAGCGACTAAAGACACTTCAGGACAAAGATGGCTTCGGGGCTGTGCTCTTTTCAAGCCATGTCCGCAAG
Seq A exon
GTTAGACAAGGGACAAGGATGGCTTCAGGGCTGTGCTCTTTTTCTAGCCACGTCTGCAAGGTTAGAAGCTGGTGCAGAGTTTTGGGGGGGCACTTGGGAGAAAATGGAGGCAACCCCAGCCCAGGCCCAGCTGCTCCTGACACTCCCAAAACTGTCGCCAGCGGGGAGGGGAGGCAGTAGGGACTGCCGAAGCCTGGGGCCCTGGTGGGTGACAGGGCAGCACCAGCCTGGGTCCAGCCACCTCTCCCACAG
Seq C2 exon
GTGAACCGCTTCCACAAGATCCGGAACCGGGCCCTCCTGCTCACAGACCAGCACCTCTACAAGCTGGACCCTGACCGGCAGTACCGGGTGATGCGGGCCGTGCCCCTTGAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136286-MYO1G:NM_033054:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF060178=Myosin_TH1=FE(16.7=100)
A:
NA
C2:
PF060178=Myosin_TH1=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTGACAATCCCACAGCAT
R:
CGCATCACCCGGTACTGC
Band lengths:
199-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)