MmuINT0104282 @ mm9
Intron Retention
Gene
ENSMUSG00000020437 | Myo1g
Description
myosin IG [Source:MGI Symbol;Acc:MGI:1927091]
Coordinates
chr11:6407872-6408297:-
Coord C1 exon
chr11:6408193-6408297
Coord A exon
chr11:6407986-6408192
Coord C2 exon
chr11:6407872-6407985
Length
207 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
3' ss Seq
CTCAGGCATCTCTTCTGCAGGTG
3' ss Score
8.34
Exon sequences
Seq C1 exon
GACACTGACAACCCCACAGCTTCCCATCTGTTTGCTGAGCAACTAAAGGCACTTCGGGAGAAAGATGGCTTTGGCTCTGTGCTTTTCTCCAGCCATGTGCGCAAG
Seq A exon
GTTGGTACTTGGCCTGGAGGTCATGGGGAACAAAGACTGGAGGGACTCAGGAGAGACCTGAGACAGCCTCAGCCCAGGTTTGGTTACTTCTGATACTCCCGAAACCAGCATCCTTGGTCAGCCAGTGAGGAAAGAACAAAGGGAGGAACTGCTGGGCCAGGGAAAGGATGGGCGGTACCAGCCTGGACTCAGGCATCTCTTCTGCAG
Seq C2 exon
GTGAATCGCTTCCGCAAGAGCCGGGACCGGGCCCTTCTGCTCACAGATCGGTATCTGTACAAGCTGGAGCCTGGACGACAGTACCGGGTGATGCGGGCTGTGCCTCTGGAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020437-Myo1g:NM_178440:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF060178=Myosin_TH1=FE(16.7=100)
A:
NA
C2:
PF060178=Myosin_TH1=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGACAACCCCACAGCTTC
R:
CATCACCCGGTACTGTCGTCC
Band lengths:
196-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: