BtaINT0098200 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003763 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:58227330-58228915:+
Coord C1 exon
chr10:58227330-58227495
Coord A exon
chr10:58227496-58228768
Coord C2 exon
chr10:58228769-58228915
Length
1273 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
3' ss Seq
CCCAAAATCTTCTTTTAAAGATG
3' ss Score
6.03
Exon sequences
Seq C1 exon
GAAAGCTGTTACTGCCACTGCCTTAAAAGAAGCGTGGGCAGCCATTGTCATTCAGAAGTACTGTCGAGCGTATCTCGTCCGCAACTTGTACCAGCTGATTCGTGTGGCCACTATCACCATCCAGGCCTACACCCGAGGATTCCTGGCAAGGAGGAGGTATCAAAAG
Seq A exon
GTGTGGCTTTCTGGGATATGAGTGTCTGTTCATATGTGTCTGCTGCAGCCAGGATTTGGTTATTGTTTCCAAAGTCTAGGTAGGAGAAAATATCTGCAAGTAATGCTACCAACAAAGGATTAATTTCCAAAATATACAAATAGCTTATACTACTAAACATAACCCAGTCAAAAAATGGGCAGAAGACCTAAATAGACATTTCTCCAAAGAAGACATGCAGATGGCCAAGAGGCACATGAAAGATTCTCAGCATCACTAATTATTTAGAGAAATGCAAGTCAGAACTACAGTGAGGTAGCATCTCACACCAGTCAGATTGGCCATCATCAAAAAATCTACTAATAATAAACGCTGGAAAGGTTATGGAAAAAAGGGAGCACTCCTACATTTTTGGTGGGAATGTAAATTGGTGTAGCCACTATGCAGAACATATGGAGGTTGCTTAAAAAGCTAAAAATAAAATTACCATATGATCCTGCAATCCTGCTCCTGGGCATGTATCTAGAACAAATTCTAATTTGAAAAGATCCACCCACCCCTATGTTCATAGCAGTGCTGTTTACAGTAGCCAGGACCTGGAAACAACCTCAATGTCTATTCACAGATGAATGGATAAACAAGATGTGGTACATACATACCACATACACACCGGAATGTTATTTGGCCATTAAAAAAGTGTGAAATAATGTCATTTGCAGCAACATGGTTGAGGCTTGAAATTATCATAGTAAGTGAAGTAAATCAGAGAAAGACAAATATCATGTGCCATCACTTATATGTGGAATCTTTTAAAATGATGCAAATGAACTTATTTATGGAACAGAAATAGATTCACAGACATCGAAAACAAACATAGGGTTAGTTACCAAGAGGATAGTGGGAGGGGAGTGGAAAAATTAAGACTTTGGGATTAACATATATGCACTACTATATATAAAACAGATAAACTACGAAGACTATACACAGAGTATACACAGGGAACTATATCTTGTAATAACCTATAGTGAAAAAATCTGAGAAAGAATATATATATAGGTATAGCTGAATCACTGTGCGGTACACTTGAAACTCATACAACATTGTAAGTAAACTAGAGTTCAGTTTTTAAAAATCTGAAAAAAAATAGGTAAACAGAATTGTGTGGGTTGACTACAAAAAATTAGTATTTCACCCTGTAGGAGTATTCTGGTAGTTACATCTCTCAACACTGAAAGAGTTGATGAGAAAAAACAGTGGAGACCCATTTTGCATTTCCCAAAATCTTCTTTTAAAG
Seq C2 exon
ATGCTGAAAGAACACAAGGCTGTGATCCTGCAGAAATATGCCCGGGCATGGCTAGCCAGACGCAGATTTCAGAATATCCGACGATTTGTGCTCAACATTCAGCTCACTTACAGAGTTCAGCGTTTGCAGAAAAAGGTAGAAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003763:ENSBTAT00000004905:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061222=IQ=WD(100=37.5),PF0061222=IQ=WD(100=37.5)
A:
NA
C2:
PF0061222=IQ=WD(100=42.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCTGTTACTGCCACTGCC
R:
GGTCTTCTACCTTTTTCTGCAAACG
Band lengths:
310-1583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development