Special

RnoINT0097304 @ rn6

Intron Retention

Gene
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82218854-82219424:+
Coord C1 exon
chr8:82218854-82219019
Coord A exon
chr8:82219020-82219277
Coord C2 exon
chr8:82219278-82219424
Length
258 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TCACCAAGCTCCTTCTCCAGTTG
3' ss Score
4.77
Exon sequences
Seq C1 exon
GAAGGCCATCACTGCCACTGCCTTGAAGGAGGCCTGGGCAGCCATCATCCTCCAGAAGCATTGCCGAGGCTACCTGGTCCGTAACCTGTACCAGCTGATCCGTGTGGCCACCATCACCATCCAGGCACACACCAGGGGCTTCCTGGCCAGGAGGCGGTACCGGAAG
Seq A exon
GTATGGAGTGAACTTAGGCTGCTGTTCCTCGTTGCACTTTCCTCAAGGCAAGGGTTCTGGTGAGAGAGGGATCCTCACTGCCCTGGGGGTTTGCCTGAGGGGTTGCTCCAGAAGTCTGGGATGAAGGCTCAGTGGGTCGATGATGGGAGACTCCTGTCTGCACCGTGCAAGTGCTCCAGGGCTGGGTCTCCCAGTGATGAAGGACCCAGAGAGAGAAACAGGAGGTCAGTCTGACATTTCACCAAGCTCCTTCTCCAG
Seq C2 exon
TTGCTGCAGGAGCACAAGGCAGTGATCCTTCAGAAGTATGCGAGGGCATGGCTGGCCCGGCGCAGATTCCAGAACATCCGCAGGTTCGTGCTCAACATTCAGCTGACTTACAGGGTCCAGCGCTTGCAGAAGAAGCTGGAGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356:ENSRNOT00000011768:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0061222=IQ=WD(100=37.5),PF0061222=IQ=WD(100=37.5)
A:
NA
C2:
PF0061222=IQ=WD(100=42.9),PF131661=AAA_13=PU(4.2=20.4)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
ALTERNATIVE
Zebrafish
(danRer10)
LOW PSI
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACTGCCACTGCCTTGAAG
R:
CCTCCAGCTTCTTCTGCAAGC
Band lengths:
301-559
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]