HsaINT0108844 @ hg38
Intron Retention
Gene
ENSG00000128833 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr15:52239733-52242213:-
Coord C1 exon
chr15:52242048-52242213
Coord A exon
chr15:52239880-52242047
Coord C2 exon
chr15:52239733-52239879
Length
2168 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CACAAAATCTTGTTTTAAAGATG
3' ss Score
5.28
Exon sequences
Seq C1 exon
GAAAGCTATTACTGCAGTGGCCTTAAAAGAAGCTTGGGCAGCCATAATCATTCAGAAGCACTGCCGCGGGTATCTTGTTCGCAGCCTGTATCAGTTGATTCGCATGGCCACCATCACAATGCAGGCCTACAGCCGAGGATTCCTGGCAAGGAGGAGGTATCGAAAG
Seq A exon
GTGAGGCCAACCTCTGTCTAGAGGAAGGGAGGGTGTACGGGCCTTCCTTACTGAGAACAAAACAGGGCCCAGGGAAAGACTTCACTATGGGCAACCTCACTTTGTACAAAGTGTCAGCCAAGCCAGAAAGGAGATTCTTCCAGGTGCTGTGGCTCATGCCTGTAGTCCCAACTACTCAGGGAGCTGAAATGGGAGGGTTCCTTGAGCCCAGGAGTTCGAGGCTGCAGTGAGCTATGATCATGCCAGTACACTCCAGCCTGCGTGGGTGACAGAGGGAGACCCTGTCTCTCTCTCTCACACACACACACACACACACACCAGTTGCACTGTTGGTTTCTCTTTCTCCCAGTTGGCCCCAAAGAGACCACACCAAAGGAAAGTACATTTTAAGCCAATAATGTGCACCTAACAGACAGGATATACACCTAACAGACCTCACCTAAAGCAGAGACTGGGTTGGGGAAAGAAATTTTAAAAGATCAGCACACTGGCTGGGCACGGTGGCTCACACCTGTAATCCCAGCACTGTGGGAGGCCGAGGTGAGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTGGTGACGGGCACCTGTAGTCCCAGCTGCTCGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCAAGATTGCACCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGATTAGCCCACTGCCACCCCACAGACTGTAGAGAGCTCTCACAGCCAGATGGGATGTCCAGGGTGTCCAACTCCAAAGAAACGAATTCAAAGTAATATAAAATTGAACAAGTTTTCTACATAAGCTATTCAAGATTTCTCCAGCACTGACTAATACAAAGCACAATGAGATGGCTCTTTTAGAGGCAGCAGCTTTAGACTCAGAAAAGGGTGATGAGATGAGTTTCATACGGCAAAAAAATAATTTTCTTTCTTTCAAGGAGGGAGGAGAGCAATAAGTGTTCACTTCAACATAAGGGGTGCCTGATCCATCCTGTGAGTGGATGGGAAAGGGGTTGAGATAGGACAAAAGTTTGGTCTCAGAGATTTCACAATCTTAATTCGGTCACTTCTGATGAAAAAGTAAAGTTGTCCAAAGATACTTTAAAGCTGAAAACCTGAACAGTATATTTTGGGGGGTTTCATTCTGGCTAACTCCTGGAATCACCTTTTAAAACATTTTATTTATTTATTTATTTTTGAGACAAGGTCTCACTCAGTTGCCCAGGCTGGAGTGCAGTGGCACAACCATGGCTCACTGCAGCCTCAGCCTCCCAGGTTCAAGCAATCCTCCCATCTCGGCCTCCTGAGTAGCTGGGACCACAGGCGTGAGCCACCATGCCCAGCTAATTTTTCTTTTTTTTTTTTCTTTTTTCTTCTTTTTCTTTTTTTGTAGAGAATGAGTCTCTATATTGCCAAGGCTGGTCTTGAGCTCCTAGACTAAAGGGATCCTCATGCCTCAGCCTCCTGAGTAGCTAGGACTACAGGTACGTGCCACCACACCTGGCTAATTTTTAAAATTTTTTTGTAGAGATGAGGTATTGCTATGTTGCCTAGGCTGGTCTTGAACTCCTGGCCTCAAGCGATCTTCCCTCCTGGGCCTCCCAAAGCACTGGGATTACGGTGTGAGCCATAGGCCTGGCCCTAGTGCAACTGTTTTGATGTTGAATATGACAAGTATCTTTTTGAAATAACTAGTCTCTCCAAAAAAAGAAAAAGAAAAAGAAAAGAAAAAAAGAAAGTTATGGCAGAGACCAATTTCTTGGGACATGGGTTTCTCATGCCATTTTTTACCAACAATAGTAAGACTGTTTTTCTGCATAAAGACCTTCCTGGAGACAGGGGGTTCTAGAATGAGAGTGTCTGTTCATATACACCTGCTACAGGTAGGATTTGGTTATTGTTTGAAAAGTCTAGCTGTAATACGGCTGTGCAGGTTGACAAGAAGAAACTCATTTTCTACACCGTGGTAGTTGCATCTTCCAGTGTTGAAGGAGTTGGTTAGAGAAGCACTTGGGATCCAGTTTATGTTTCACAAAATCTTGTTTTAAAG
Seq C2 exon
ATGCTGGAGGAACATAAGGCTGTGATCCTACAGAAATACGCACGGGCGTGGCTGGCCAGACGCAGATTCCAGAGTATCCGACGATTCGTGCTTAATATTCAGCTTACTTACAGGGTCCAGCGTTTGCAGAAAAAGTTGGAAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128833:ENST00000261839:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061222=IQ=WD(100=37.5),PF0061222=IQ=WD(100=37.5)
A:
NA
C2:
PF0061222=IQ=WD(100=42.9)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development