GgaINT1018779 @ galGal4
Intron Retention
Gene
ENSGALG00000004641 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:8348512-8349217:+
Coord C1 exon
chr10:8348512-8348683
Coord A exon
chr10:8348684-8349070
Coord C2 exon
chr10:8349071-8349217
Length
387 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
GTCAATGCTTTCTTCCAAAGATG
3' ss Score
6.74
Exon sequences
Seq C1 exon
ATTAAGGCAAGCCATAACAGCACGAGCTCTGAAGGAAACGTGGGCAGCTATAATTATTCAGAAGTACTGCCGAGGTTACCTCGTCCGTAAACTTTGCCAGCTCATCCATGTGGCTGCTGTAACAATCCAGGCTCACACCAGAGGATTTCTGGCGAGAAAGAAATACCGGAAG
Seq A exon
GTACGGCCTACTGCAAAACCTGATCTCAGTAGCTGGAAACAGCAATCACTCTGAGAGGAAGATGGAGACAAAGGCAGCGATCCCTGCTACTTTACCTTGCATGTGTTATTCTTCTGTCTTCTACTTGTTTCTGTACATGTATTGCAATAATACTGACACACGGTAGCTGAGATCTAAATCTCCTGGCTGTTAAGCTGTCTGATTCATACTTGATGCAGATCATTTAGTGTGATTGCTGCAGTTGTTCAGGTACGTGTGCAGTCTGAATATCTCACTGTTTTGGTACTTCCGAGAGCACAGAAACGTGCGTAGATTCACAGAACGCTTCAGCTGACGTCAGCTGAGCCGCACATACTCACAGACAGGTGTCAATGCTTTCTTCCAAAG
Seq C2 exon
ATGCTCGAGGAACACAAGGCTGTGATCCTCCAGAAATACGCCCGCGCGTGGCTGGCCAGGCGCAGGTTCCAGAACGTTCGGCGGTTTGTGCTGAACATCCAGCTGTCGTACCGAGTTCAGCGGCTGCAGAAGAAGATAGAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641:ENSGALT00000007393:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061222=IQ=WD(100=36.2),PF0061222=IQ=WD(100=36.2)
A:
NA
C2:
PF0061222=IQ=WD(100=42.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTAAGGCAAGCCATAACAGCAC
R:
TGCTCTTCTATCTTCTTCTGCAGC
Band lengths:
318-705
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]