Special

HsaINT0108844 @ hg19

Intron Retention

Gene
Description
myosin VC [Source:HGNC Symbol;Acc:7604]
Coordinates
chr15:52531930-52534410:-
Coord C1 exon
chr15:52534245-52534410
Coord A exon
chr15:52532077-52534244
Coord C2 exon
chr15:52531930-52532076
Length
2168 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CACAAAATCTTGTTTTAAAGATG
3' ss Score
5.28
Exon sequences
Seq C1 exon
GAAAGCTATTACTGCAGTGGCCTTAAAAGAAGCTTGGGCAGCCATAATCATTCAGAAGCACTGCCGCGGGTATCTTGTTCGCAGCCTGTATCAGTTGATTCGCATGGCCACCATCACAATGCAGGCCTACAGCCGAGGATTCCTGGCAAGGAGGAGGTATCGAAAG
Seq A exon
GTGAGGCCAACCTCTGTCTAGAGGAAGGGAGGGTGTACGGGCCTTCCTTACTGAGAACAAAACAGGGCCCAGGGAAAGACTTCACTATGGGCAACCTCACTTTGTACAAAGTGTCAGCCAAGCCAGAAAGGAGATTCTTCCAGGTGCTGTGGCTCATGCCTGTAGTCCCAACTACTCAGGGAGCTGAAATGGGAGGGTTCCTTGAGCCCAGGAGTTCGAGGCTGCAGTGAGCTATGATCATGCCAGTACACTCCAGCCTGCGTGGGTGACAGAGGGAGACCCTGTCTCTCTCTCTCACACACACACACACACACACACCAGTTGCACTGTTGGTTTCTCTTTCTCCCAGTTGGCCCCAAAGAGACCACACCAAAGGAAAGTACATTTTAAGCCAATAATGTGCACCTAACAGACAGGATATACACCTAACAGACCTCACCTAAAGCAGAGACTGGGTTGGGGAAAGAAATTTTAAAAGATCAGCACACTGGCTGGGCACGGTGGCTCACACCTGTAATCCCAGCACTGTGGGAGGCCGAGGTGAGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTGGTGACGGGCACCTGTAGTCCCAGCTGCTCGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCAAGATTGCACCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGATTAGCCCACTGCCACCCCACAGACTGTAGAGAGCTCTCACAGCCAGATGGGATGTCCAGGGTGTCCAACTCCAAAGAAACGAATTCAAAGTAATATAAAATTGAACAAGTTTTCTACATAAGCTATTCAAGATTTCTCCAGCACTGACTAATACAAAGCACAATGAGATGGCTCTTTTAGAGGCAGCAGCTTTAGACTCAGAAAAGGGTGATGAGATGAGTTTCATACGGCAAAAAAATAATTTTCTTTCTTTCAAGGAGGGAGGAGAGCAATAAGTGTTCACTTCAACATAAGGGGTGCCTGATCCATCCTGTGAGTGGATGGGAAAGGGGTTGAGATAGGACAAAAGTTTGGTCTCAGAGATTTCACAATCTTAATTCGGTCACTTCTGATGAAAAAGTAAAGTTGTCCAAAGATACTTTAAAGCTGAAAACCTGAACAGTATATTTTGGGGGGTTTCATTCTGGCTAACTCCTGGAATCACCTTTTAAAACATTTTATTTATTTATTTATTTTTGAGACAAGGTCTCACTCAGTTGCCCAGGCTGGAGTGCAGTGGCACAACCATGGCTCACTGCAGCCTCAGCCTCCCAGGTTCAAGCAATCCTCCCATCTCGGCCTCCTGAGTAGCTGGGACCACAGGCGTGAGCCACCATGCCCAGCTAATTTTTCTTTTTTTTTTTTCTTTTTTCTTCTTTTTCTTTTTTTGTAGAGAATGAGTCTCTATATTGCCAAGGCTGGTCTTGAGCTCCTAGACTAAAGGGATCCTCATGCCTCAGCCTCCTGAGTAGCTAGGACTACAGGTACGTGCCACCACACCTGGCTAATTTTTAAAATTTTTTTGTAGAGATGAGGTATTGCTATGTTGCCTAGGCTGGTCTTGAACTCCTGGCCTCAAGCGATCTTCCCTCCTGGGCCTCCCAAAGCACTGGGATTACGGTGTGAGCCATAGGCCTGGCCCTAGTGCAACTGTTTTGATGTTGAATATGACAAGTATCTTTTTGAAATAACTAGTCTCTCCAAAAAAAGAAAAAGAAAAAGAAAAGAAAAAAAGAAAGTTATGGCAGAGACCAATTTCTTGGGACATGGGTTTCTCATGCCATTTTTTACCAACAATAGTAAGACTGTTTTTCTGCATAAAGACCTTCCTGGAGACAGGGGGTTCTAGAATGAGAGTGTCTGTTCATATACACCTGCTACAGGTAGGATTTGGTTATTGTTTGAAAAGTCTAGCTGTAATACGGCTGTGCAGGTTGACAAGAAGAAACTCATTTTCTACACCGTGGTAGTTGCATCTTCCAGTGTTGAAGGAGTTGGTTAGAGAAGCACTTGGGATCCAGTTTATGTTTCACAAAATCTTGTTTTAAAG
Seq C2 exon
ATGCTGGAGGAACATAAGGCTGTGATCCTACAGAAATACGCACGGGCGTGGCTGGCCAGACGCAGATTCCAGAGTATCCGACGATTCGTGCTTAATATTCAGCTTACTTACAGGGTCCAGCGTTTGCAGAAAAAGTTGGAAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128833-MYO5C:NM_018728:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0061222=IQ=WD(100=37.5),PF0061222=IQ=WD(100=37.5)
A:
NA
C2:
PF0061222=IQ=WD(100=42.9)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development