BtaINT0098202 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003763 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:58185927-58186782:+
Coord C1 exon
chr10:58185927-58186092
Coord A exon
chr10:58186093-58186637
Coord C2 exon
chr10:58186638-58186782
Length
545 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
3' ss Seq
CATCCAACATCTTTCCTCAGGAA
3' ss Score
7.92
Exon sequences
Seq C1 exon
GAGCTGGATTATTCCATTGATCCTGAATGTCTGCCTCCACTTCGAAATCCTGACATCCTCGTGGGTGAGAATGACCTCACAGCTCTCAGCTATCTCCATGAGCCTGCAGTGCTCCACAATCTCAGAATCCGTTTTGCAGAATCCAAACTCATTTACACCTACAGCG
Seq A exon
GTAAGGAAAGCAATTCCAGGAGAGCAGGAACGCTTGCTGTCTAGAGCATCCTGATTACGTTTTAGATTATGTTTATATTAGAAATGTTGACTTCTGTCAAAATGCGTAATCACACCTAAACATTTGCCCAGATTGCTATCTAAAAGGTACAGACATCTGAACTTAGAGAATCTGTTATAAAATGAACTATCTCGGTGGGAAGAGTCTTCAACAAATACTAAGCTTGGACTACCAAGAAAAATGTATGTAGGTAAAGCTTGTGTTTGAGTTTCTATTGGCTATAATAAGTTTATTACTGGAGCAATATTATCATTGTGTTTACGCTGAGGATGGTAAGAGCCTCTCAGTTTTAGTGCATTGCCATCTGTCATCTTGTCTAACCTTAAGGGTGGCCTAGAAATGTAGGTGACATCAGCAGGGAACGGAGATTCAGAGCATAAAGTGACCTACCCAGAGTCGCACAGCAGGTTTAATAAGTGGCTGATCTGAAAGTTTCTCAAAAGACCCAAAGAGGTGACATCACTGCATCCAACATCTTTCCTCAG
Seq C2 exon
GAATCATCTTGGTGGCCATGAATCCTTACAAGCAGCTGCCAATATATGGAGATCCCATCATCCACGCCTACAGCGGGCAGAACATGGGCGACATGGACCCACACATATTTGCCGTGGCGGAAGAGGCATACAAGCAGATGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003763:ENSBTAT00000004905:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(4.9=58.9)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTCCATTGATCCTGAATGTCTGCC
R:
CTGGCCATCTGCTTGTATGCC
Band lengths:
302-847
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development