GgaINT1018789 @ galGal4
Intron Retention
Gene
ENSGALG00000004641 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:8337792-8338443:+
Coord C1 exon
chr10:8337792-8337957
Coord A exon
chr10:8337958-8338298
Coord C2 exon
chr10:8338299-8338443
Length
341 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
TTTTGTGCACTTGGTTGCAGGAA
3' ss Score
8.16
Exon sequences
Seq C1 exon
GAGCTCCATTACCCCGTTGACCCATCAGCTTTGCCGCCTCTGCGTAATCCCGACATCCTTGTTGGTGAGAACGACCTGACTGCCCTCAGCTACCTCCATGAGCCCGCTGTTCTGCACAACCTTAAAGTTCGTTTCGTGGAGTCTCGGCTTATCTACACCTACAGTG
Seq A exon
GTAAGCAAAAGCAAACTCAAGGTTTAAAAAAGCAAAACTCACCTTGGCTTACCTGACGCAGTGGGCGGCAGCCCTGCCCATGGCAGGAGGTTGGATATGCATGGTCTTTTAAGGTTCCCTCCAACCCAAATCATTCTATGAATAGCTTGCAGTACGGTGTGAGTGGTGTTTTCCTCGGGTGTCTTTTAACTCATTGAGTGGAGATCTGTATGAGTGTACATTCATTTTTTGACCAGAACATTATACCTGGTTTAGAACACGTTGTAGCCGTTGTCACCAGTTTTCACTGCACTAATCTGTGTTTTCTTTGTTTTCTTTCTCTTTTGTGCACTTGGTTGCAG
Seq C2 exon
GAATAATTTTGGTTGCAATAAATCCCTATAAGCAGTTGCCAATATATGGAGATGCTATTATCCACGCATATAGTGGGCAAAACATGGGGGACATGGATCCTCATATATTTGCCGTGGCAGAAGAAGCATACAAGCAAATGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641:ENSGALT00000007393:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(4.9=58.9)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCCATTACCCCGTTGAC
R:
CTTGCCATTTGCTTGTATGCT
Band lengths:
311-652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]