GgaEX0006319 @ galGal4
Exon Skipping
Gene
ENSGALG00000004641 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:8337792-8339088:+
Coord C1 exon
chr10:8337792-8337957
Coord A exon
chr10:8338299-8338443
Coord C2 exon
chr10:8338932-8339088
Length
145 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGCACTTGGTTGCAGGAA
3' ss Score
8.16
5' ss Seq
AAGGTTCAG
5' ss Score
2.52
Exon sequences
Seq C1 exon
GAGCTCCATTACCCCGTTGACCCATCAGCTTTGCCGCCTCTGCGTAATCCCGACATCCTTGTTGGTGAGAACGACCTGACTGCCCTCAGCTACCTCCATGAGCCCGCTGTTCTGCACAACCTTAAAGTTCGTTTCGTGGAGTCTCGGCTTATCTACACCTACAGTG
Seq A exon
GAATAATTTTGGTTGCAATAAATCCCTATAAGCAGTTGCCAATATATGGAGATGCTATTATCCACGCATATAGTGGGCAAAACATGGGGGACATGGATCCTCATATATTTGCCGTGGCAGAAGAAGCATACAAGCAAATGGCAAG
Seq C2 exon
AAACGGCAAGAATCAGTCTATTATAGTCAGCGGAGAATCAGGAGCTGGAAAGACTGTGTCTGCAAGATACACTATGAGATACTTTGCCACCGTGAGTAAGTCGAGCAGCAATGCACACGTGGAGGATAAAGTTCTGGCATCCAATCCAATCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(4.9=58.9)
A:
PF0006316=Myosin_head=FE(7.1=100)
C2:
PF0006316=Myosin_head=FE(7.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCGTAATCCCGACATCCT
R:
TATCCTCCACGTGTGCATTGC
Band lengths:
256-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]