HsaEX6074806 @ hg38
Exon Skipping
Gene
ENSG00000128833 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr15:52275562-52279674:-
Coord C1 exon
chr15:52279509-52279674
Coord A exon
chr15:52278873-52279017
Coord C2 exon
chr15:52275562-52275718
Length
145 bp
Sequences
Splice sites
3' ss Seq
CATCTAACATCTTTCCCCAGGAA
3' ss Score
9.09
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
Exon sequences
Seq C1 exon
GAGCTGGATTATTCTGTCAATCCAGAATCTCTGCCTCCACTTCGGAATCCTGACATCCTCGTGGGCGAGAATGACCTCACGGCTCTCAGCTATCTTCACGAGCCCGCGGTGCTCCACAACCTCAGAATCCGCTTTGCAGAATCCAAACTCATTTACACCTACAGTG
Seq A exon
GAATCATTTTGGTGGCCATGAATCCTTACAAGCAGTTGCCAATATACGGAGATGCCATCATCCACGCCTACAGCGGGCAGAACATGGGCGATATGGACCCACACATATTTGCCGTGGCAGAAGAGGCATACAAGCAGATGGCCAG
Seq C2 exon
AAACAACAGAAACCAGTCCATAATTGTAAGTGGGGAGTCAGGTGCTGGAAAGACAGTGTCGGCTCGCTATGCCATGAGGTACTTTGCCACCGTCAGCAAATCGGGCAGCAACGCTCACGTGGAAGACAAGGTCCTGGCATCCAATCCCATCACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128833-'5-5,'5-3,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.000 C2=0.112
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(22.8=58.9)
A:
PF0006316=Myosin_head=PU(39.6=97.7)
C2:
PF0006316=Myosin_head=FE(10.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATGACCTCACGGCTCTCA
R:
GGATTGGATGCCAGGACCTTG
Band lengths:
246-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains