Special

RnoEX6036568 @ rn6

Exon Skipping

Gene
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82185240-82189448:+
Coord C1 exon
chr8:82185240-82185405
Coord A exon
chr8:82186315-82186459
Coord C2 exon
chr8:82189292-82189448
Length
145 bp
Sequences
Splice sites
3' ss Seq
CACCTCACCTCTTTCCTCAGGAA
3' ss Score
8.93
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
Exon sequences
Seq C1 exon
GAACTGGATTACCCTGTGGACCCAGGGTCACTGCCTCCGCTTCGGAACCCAGACATCCTGGTGGGTGAGAATGATCTCACAGCCCTCAGCTACCTCCATGAGCCCGCGGTGCTGCACAACCTCAGGATCCGCTTCGCAGAGTCCAAACTCATCTACACCTACAGCG
Seq A exon
GAATCATTTTGGTGGCTATGAATCCTTACAAACAGCTGCCAATATATGGGGATGCCATCATCCACGCCTACAGCGGACAGAACATGGGCGACATGGACCCACACATCTTTGCGGTTGCAGAGGAGGCCTACAAGCAGATGGCCAG
Seq C2 exon
GAACAATAGGAATCAGTCCATAATCGTGAGTGGGGAATCTGGAGCCGGGAAGACTGTCTCTGCAAGATACGCCATGAGGTACTTTGCCACCGTCAGCAAGTCCAGCAGTAACGCCCATGTGGAGGAAAAAGTCCTGGCATCCAATCCCATCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356-'4-5,'4-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.036 A=0.000 C2=0.113
Domain overlap (PFAM):

C1:
PF0006316=Myosin_head=PU(15.2=58.9)
A:
PF0006316=Myosin_head=FE(22.1=100)
C2:
PF0006316=Myosin_head=FE(24.0=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
ALTERNATIVE
([1])
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATTACCCTGTGGACCCAG
R:
CTGACGGTGGCAAAGTACCTC
Band lengths:
258-403
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]