MmuEX6067287 @ mm10
Exon Skipping
Gene
ENSMUSG00000033590 | Myo5c
Description
myosin VC [Source:MGI Symbol;Acc:MGI:2442485]
Coordinates
chr9:75244970-75249889:+
Coord C1 exon
chr9:75244970-75245135
Coord A exon
chr9:75246138-75246282
Coord C2 exon
chr9:75249733-75249889
Length
145 bp
Sequences
Splice sites
3' ss Seq
CACTTCACCTCTTTCCTCAGGAA
3' ss Score
9.02
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
Exon sequences
Seq C1 exon
GAGCTGGAATACCCTGTTGACCCAGGGTCACTGCCTCCGCTTCGGAACCCTGACATCCTGGTGGGTGAGAATGACCTCACAGCCCTCAGCTACCTCCATGAGCCCGCAGTGCTGCATAATCTCAGAATCCGCTTCGCAGAGTCCAAACTCATCTACACCTACAGTG
Seq A exon
GAATCATTTTGGTGGCCATGAATCCTTACAAACAGCTACCAATATACGGGGATGCCATCATCCACGCCTACAGCGGACAGAACATGGGTGACATGGACCCACACATCTTTGCGGTTGCAGAGGAGGCCTACAAGCAGATGGCCAG
Seq C2 exon
GAACAATAGAAATCAGTCCATAATCGTGAGTGGAGAATCAGGAGCCGGGAAGACTGTCTCTGCACGCTATGCCATGAGGTACTTCGCTACCGTCAGCAAATCGAGCAGCAATGCCCATGTGGAGGACAAAGTCTTGGCATCCAATCCCATAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033590-'9-6,'9-5,10-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.000 C2=0.084
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(17.7=58.9)
A:
PF0006316=Myosin_head=FE(25.8=100)
C2:
PF0006316=Myosin_head=FE(28.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGTGGGTGAGAATGACC
R:
GACTTTGTCCTCCACATGGGC
Band lengths:
244-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types