BtaEX6053690 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003763 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:58185927-58190270:+
Coord C1 exon
chr10:58185927-58186092
Coord A exon
chr10:58186638-58186782
Coord C2 exon
chr10:58190114-58190270
Length
145 bp
Sequences
Splice sites
3' ss Seq
CATCCAACATCTTTCCTCAGGAA
3' ss Score
7.92
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
GAGCTGGATTATTCCATTGATCCTGAATGTCTGCCTCCACTTCGAAATCCTGACATCCTCGTGGGTGAGAATGACCTCACAGCTCTCAGCTATCTCCATGAGCCTGCAGTGCTCCACAATCTCAGAATCCGTTTTGCAGAATCCAAACTCATTTACACCTACAGCG
Seq A exon
GAATCATCTTGGTGGCCATGAATCCTTACAAGCAGCTGCCAATATATGGAGATCCCATCATCCACGCCTACAGCGGGCAGAACATGGGCGACATGGACCCACACATATTTGCCGTGGCGGAAGAGGCATACAAGCAGATGGCCAG
Seq C2 exon
AAACAATAAAAACCAGTCAATAATTGTAAGTGGGGAGTCGGGTGCTGGAAAGACAGTGTCTGCTCGCTATGCCATGAGGTACTTTGCCACCGTCAGCAAGTCCAGCAGTAACACTCACGTGGAAGACAAGGTCCTCGCATCAAACCCCATAACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003763-'4-5,'4-3,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.113
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(4.9=58.9)
A:
PF0006316=Myosin_head=FE(7.1=100)
C2:
PF0006316=Myosin_head=FE(7.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCTGACATCCTCGTGGGT
R:
AGGACCTTGTCTTCCACGTGA
Band lengths:
256-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]