Special

DreEX0048721 @ danRer10

Exon Skipping

Gene
Description
myosin VC [Source:ZFIN;Acc:ZDB-GENE-131127-196]
Coordinates
chr25:4664464-4666222:+
Coord C1 exon
chr25:4664464-4664632
Coord A exon
chr25:4664722-4664866
Coord C2 exon
chr25:4666066-4666222
Length
145 bp
Sequences
Splice sites
3' ss Seq
TATTAATTTATTATTTGTAGGAA
3' ss Score
7.1
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
GAGTTGCATTATCCTCTGGAAGGGGGTGAAAAGTTGCCACCCCTCCGAAACCCCGATATCCTGGTGGGTGAAAACGACCTGACGGCTCTCAGTTACCTTCACGAGCCGGCCGTGCTGCATAACCTCAAAGTCCGATTTGTTGAGTCCAAAATCATCTACACGTATTGCG
Seq A exon
GAATAATTTTGGTGGCTGTCAATCCATATAAGCAGCTTCCCATCTATGGAGATGCAGTCATCCATGCATACTCCGGGCAAAACATGGGCGATCTGGACCCTCATATATTCGCTGTGGCTGAAGAAGCCTACAAACAAATGGCCAG
Seq C2 exon
GAATAACAAAAATCAGTCCATCATTGTGAGCGGTGAGTCCGGGGCCGGAAAGACTGTATCTGCTCGCTATGCTATGAGATACTTTGCCATGGTCAGCAAATCCGGCAGCAAAACCCGAGTGGAGGACAAAGTTTTGGCGTCCAATCCGATCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104235-'2-6,'2-5,3-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.043 A=0.000 C2=0.003
Domain overlap (PFAM):

C1:
PF0006316=Myosin_head=PU(4.9=57.9)
A:
PF0006316=Myosin_head=FE(33.6=100)
C2:
PF0006316=Myosin_head=PD(42.7=95.3)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
ALTERNATIVE
([1])
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGACGGCTCTCAGTTACCT
R:
CTCAGTGATCGGATTGGACGC
Band lengths:
249-394
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]