GgaINT1018799 @ galGal4
Intron Retention
Gene
ENSGALG00000004641 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:8338299-8339088:+
Coord C1 exon
chr10:8338299-8338443
Coord A exon
chr10:8338444-8338931
Coord C2 exon
chr10:8338932-8339088
Length
488 bp
Sequences
Splice sites
5' ss Seq
AAGGTTCAG
5' ss Score
2.52
3' ss Seq
CTCTGATGATTTGGTTTCAGAAA
3' ss Score
6.4
Exon sequences
Seq C1 exon
GAATAATTTTGGTTGCAATAAATCCCTATAAGCAGTTGCCAATATATGGAGATGCTATTATCCACGCATATAGTGGGCAAAACATGGGGGACATGGATCCTCATATATTTGCCGTGGCAGAAGAAGCATACAAGCAAATGGCAAG
Seq A exon
GTTCAGTGTGCTGTTTTACTGCAATAAATAACACTCAGTCAAATAGCAGTCTGCTAATTGTAATTTAGATTAACTGTGTGTGTGCCATTGGCTATCATGAATACCTCTGAATGTGTAACTTAACTAAACTAGAGAAGGAATAACTCCTCAACCAGCTGCAGGATTTGGGATTGGAAGTAAATGGCCTTTAAGGTCCACTCCAACCTGGGCAGTTCCGTGATTCTTTGATTTCTGTAACTTGGAACCGTTTTCATTTCTGACAAGGGCCAAAACTGTCTTAGCTGTGTGAGCAGCAGTGACATTGGCCTGGAGGTCACAGCCAAAGAGGTGTGAAACAGAAGAGCAGATGAAAGGTGGAACTCATACGAGTTGACCGCAGTTGTGTTTTCATACCTCTGTTTCATATGTATAACTCTTTCATATATTTGCACACATATGCATGCATTTCAGACACTTCTGATTTAAACCCTCTGATGATTTGGTTTCAG
Seq C2 exon
AAACGGCAAGAATCAGTCTATTATAGTCAGCGGAGAATCAGGAGCTGGAAAGACTGTGTCTGCAAGATACACTATGAGATACTTTGCCACCGTGAGTAAGTCGAGCAGCAATGCACACGTGGAGGATAAAGTTCTGGCATCCAATCCAATCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641:ENSGALT00000007393:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTTGCAATAAATCCCTATAAGCA
R:
CTCAGTGATTGGATTGGATGCCA
Band lengths:
294-782
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]