BtaINT0098213 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003763 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:58186638-58190270:+
Coord C1 exon
chr10:58186638-58186782
Coord A exon
chr10:58186783-58190113
Coord C2 exon
chr10:58190114-58190270
Length
3331 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
AATCCTTCTGTTTGCCTTAGAAA
3' ss Score
8.53
Exon sequences
Seq C1 exon
GAATCATCTTGGTGGCCATGAATCCTTACAAGCAGCTGCCAATATATGGAGATCCCATCATCCACGCCTACAGCGGGCAGAACATGGGCGACATGGACCCACACATATTTGCCGTGGCGGAAGAGGCATACAAGCAGATGGCCAG
Seq A exon
GTGGGGCTTCCTCTGATTCTCCCAGTGCTCCTACATCTGCTGGGCCTCATAGTGGCAGGGAGACAGCTGGCCCAGTCTCATTAAAAGTGACCCTCAGGGACTTCCCCGATGGCCCAGTGGTTAAGAATCTACCTTGCAATGCAGGGAATGTGGGTATGATCCCTGGTCTAGGAACTAGACATGCTGCAGAACAACCAAGCCCACTGCTACAACCAGGGAGTCCATGCGCCACAAAGTTCCTGCGTGCTGTTCCTAAGACCAACAGCTAAATAAATAATTATTTTTAAGTGACCATCAGGCTGGAGGGGGTGCTTGGTAGAGCAGACTGGCTTGTACCGAATAGCAAATGTTGGATATAGCTGACCTGTCTCCACCAAGCCTCCTGGTTTTACTCCTAGATAGTCCTGTCGGTCCTACCAACCTGGGAATAGTCAATGCTTTTCTTGCAATGTGTTTGGTTGGAAGAAAACTGATTTTTTTCTCCACTGTGAGATGTTTAGGCTTTTTTGCCCAGCCAAGGCAGAAGATTCTGATGATAGATGAGCACAGGTTTTAGCTGTAGGATATTTGAAGTTTTATGCTAATATTGCCTCCTCTTTCTTGTGTGGTATGTGAAGTTCTTATTTTGTTAGCACCGGACAAGGCACTGTGCACACACTCCCACACATCACCCTGAGTGCCCTCAAAAGAGCCCATGATGAGGATGCCCAGGCAGTGGTCAGATGACTGAGATTTGAAGCCATCCACCCAAGGTCACTCAGCAAGAGAAAGGCAGAGCTTGGATTTTCCCTCAGATTTCTAGATTCCATGTGTAATTTTTTTTCCTTATAACTCTTCTGTTTTGTCTTCAACATCCTGATCTGCAAAAGGATCTTTGTAGATCCTTACAGTTTGCAAAAGAACTTTCATAGACAGCGGTCTAGTTTGAGTCTGGAAACACCTCTGTGAAGTCTTCTGAGCTGCCATCATTTCCTTATTTCCAGATCAAGACTTGAGACACAGGACCTGAATCTGCTACTGTTTACTGCATAACCCTGGTACACAGCCCTGAGCTCCCTGAGCTTCAGGGTCCTCATCCGTGAGCTGGATGCTCAGTGACTTAAGCAAGATAGAAATGCATGATTCTCTCATGCAGAAAAGTCTGCTGGGCAGTCCAGGACCAGCATGCCACCTCTACCAAGTCATCAGGGACCCAGTACTTCCCAGCATCCTGATCCTTGGGGCAGGATGCACATCCTCAGAGCCAAGCTAGTGCTCAGCTCTCTTCTCTCTTTTCTAGGCTAGAGTGTTCCAGGGAAAGAGTGTGTCCCTCCTGGTTAAGGAGCCCTCCCAGAAGCCCCACAGAGCACTTCTGCTTATAGCTTATTGGTCAGGATCTACTCACATGACTGTCCCAGCTGCAAGGGAGGCTGGGATATGTAGTCTTTTGTATGGGCAGCAACATGCCCACTAAGAACTGGAGCTTAGACCCTAAGAAGCATGGGGAGGATGACTGTTGGGTCTAGAATTATCAATTAATAACCAATCACCTGGGACACCTGAACCCCATGTCCTCAAGCTCAGCAGGTGTCCTCCATGTTCCAGTCAGGCCATGAGGGACTCTGTGACTCCCTCTTCTTTGAAACACATCAGAGGCAGGGAGACAGGCCAGCTTTGCTTTTGAGGACACCAGTTGGCCCCGAACCTGCCATCCCTACTCAGGTGCTGTGACAAATGATGTAAATTCTCCTCCTTTCCTGAGCCCTGGTGGTAGCATGGAGACTCATGAGCAGAGGGCAGCCAAGCCTGACAGTGCCAGAAAATAAAAGATCTTGAAGGTTCCCCCCAAAGTTGCCAATTACCTTGGCTTTTGCTGCAGCAAGTTTCCTTTCAATCCTAAAACACCATGGATCTAGGATTTACCTTGGCCCCTGCAGGTCTCCAGGGCATCTGCAAGATTAGAATCTGTGTGCCTCAGAGCATACAGGACTACTCCTGGGTGTCAACAGCATGAGCTTATTGGAGCTTCAGAGCTGAGCCAGGTTCAAGCTTGAAGAGCCAGTTTCCTCTGGAGGCCTGTCTAACTGCAATAGCAGAATTGAACATAAAGCAGGCTCTTCTTGGACTTGTGGATACTATACTGGGAATCAGGAGAGCTGGCTTCAGTAACCCCAGGGTGTCATTCATGTCCTCAGCATCTTAGCATCCTCTGTGGAACCAGGGACTCTCGCTAATGTCCTCTCCAGAGTTCCCAGAGAGGCTGTGTGTTCTGTGCATCACCGGGTCACTGTTATGTTCATCTGTAAAATGGATATACAGTATGTGGTGTAGGATTTGTGTGAGGTTTAAATGAGAATCCTTGTAAATTATTCACCAAGAACCTCACACACAAGCAGTGCTAGGATGGCACTGTAAAAAGGTTCCACCATCATCATCTTATGATATGGAAAGTTTAGTGCATTTTTTTAAGATCTCCATGTTATATAACAGAGTATGTTGGCTTATGGAGCACACGTTTCCAGGCACATCTCAAGTAATTGCTCTCAAATAATGTCTTAAAAATGTTTTTATATTGAAGTGAAAGGAGAAAGGAGGTGACATAGGCCTGAGACTGCTGTCCTTAGAGACTTACGTGCAAGTTTGGCCCATGGTGAGCCTCTGGGAACTTGGATTTCAGGAGGGTTCATAGAACTTCCTAATTGCTGAGTAACAATTGTGAGTGGCTCACTATACCTAAACTGTTTGTGTGAACAAGGTGGTTCAGGCTGAACATCCGCTCTCCTTCTGGGCATCTGGAATTTTGGTATGTGATAGGAGAGGATATGTGACCAGACCCCAATAAAAACCCTGGACACAGTCTCTGTTGAGCATCCTGGGTAAACAGTGTTTCCCATGTGTTGTCATAATTCATTGCTGGAGGAAGTAAGTGCATCCTGTGTGACCCCCCGGGAGAGGACTCTTGGAAGTTCACACCTGGCCTCCTCTGGACTCGGCCCACATGCCATTGACCCTCGCTGATTTGCTGTCTCCTTCTGGTGTAGTAAGTCTTGGCCATGAGTACAAACGTGTGCTGAGACCTGTGAGTCCTCCTAGTGGATCACTGGTCTGGGACTGGCCTTGGGAACTCTCAATACAGGGGACACAGCAGGAGACAGAGTTGTGTGTTCAGCAGGATCACAGAGAAAAAGACTAGAAGGAAATTCACTGGCATGTTAAAAAAGTTCCTTTAGCATGATAAACCAAGTCCCTTCTGACTTATCTGCATTTTTATTAGTGCACGTATATTGCCTTTTTAATGGAAAGAAATGAACATTTTAAAAGAATTTTTTAAAAATCCTTCTGTTTGCCTTAG
Seq C2 exon
AAACAATAAAAACCAGTCAATAATTGTAAGTGGGGAGTCGGGTGCTGGAAAGACAGTGTCTGCTCGCTATGCCATGAGGTACTTTGCCACCGTCAGCAAGTCCAGCAGTAACACTCACGTGGAAGACAAGGTCCTCGCATCAAACCCCATAACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003763:ENSBTAT00000004905:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.113
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development