Special

MmuINT0104501 @ mm10

Intron Retention

Gene
Description
myosin VC [Source:MGI Symbol;Acc:MGI:2442485]
Coordinates
chr9:75246138-75249889:+
Coord C1 exon
chr9:75246138-75246282
Coord A exon
chr9:75246283-75249732
Coord C2 exon
chr9:75249733-75249889
Length
3450 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
3' ss Seq
CTCTCATGTGTTGCTTTTAGGAA
3' ss Score
10.82
Exon sequences
Seq C1 exon
GAATCATTTTGGTGGCCATGAATCCTTACAAACAGCTACCAATATACGGGGATGCCATCATCCACGCCTACAGCGGACAGAACATGGGTGACATGGACCCACACATCTTTGCGGTTGCAGAGGAGGCCTACAAGCAGATGGCCAG
Seq A exon
GTAGTTTGCTGCCAGACCGGCCTTCCTCGGCTCTTCCTCTCTCTGCCTCTACTCTCTCTGCCTCTGCTCAGCCCTCACAGTGAAAGGAAGCTGTTTTGAGCTCAGAAGTCAGGTCTGTGTTTCCCTGCAGCCCGTTTGGCTGGGGGAGGACCTAGTGACTCTGCAGCGTGAGATGTCTGTGGTTTGTGGTCTGGTTTTGATCCAGTTTAAGGAGGCAGCCTCACTGCCAGCTAAGCACAGGTTCTAGCCACAGGTTTGGATTTTAACCTGGTGCCCTCACCTCGCTTTTGCATGACCCTGCAGATTTTGCTACTGGACTTTTACAAAAATCCTCTTGCAACAAAAGCACTGGGTTCACACTTCAAGCATCACCTTGGTACCCACAGGGCAGCCTGTGATATCCATGCCTTTCCACAGTAACCTAACCCCTGGCATATGCAGTAGGCTAAAGAGAGAGCTGGGCTTTGGGCCCAGATCTTCATGATTCTAGGTGTAAGTTATTTCTCTCATGACTGTCCTCTTGTCATTCTATTGCCCTTGTCTGTAGGATGCTGGAGAATAAAAACACCATCCTAAATTTGTCAAAAACTTTACAGCTTGCAAAAGAATTCTCACACCCAGCGGTCTCCTTCAGGTTTTGCCACACTCCTACAAAGTTCACTGTACTGCTATCTTTCTTCCCATCTTGCATAAGAAACTGAGGCATGGGCTCAGGACTTGCCTCATAATTCTGGGTATAGCGACTGAATAGTCTTCATCTGTGAGGCAGACTCTGGCAGGCTCATTTATGCGCAAGGGAGCCATAGTGATGCAGTAAACAAGACATGGTTTAACAGGGAAGCCTAATGGGCAACCTGAGGCTAAATTTCACTTCTTTCAAGTCATCAGGGACTGAATGATGCCTGCCCCCATCCCTTAAGGGAGACCCATAGCCTCAGGGTCAAGCTGTCTCCTCCATACCCTACTTCACACGGACTAAGAGAAGGGACTGTCCTCCAGATGATAGAGCCCCTACAGAGCAGCATTGCTCGTGGGACATACCCACATGGCCAGATAAGGCTGGCCTACCCTTTGACCATGCCAGTAGCTCAGCCTCTCACAATGGGGTCACGTTCCCAAGAAGGCAAAAAGGATGGATGTCTGAGATGCAGTAAGATTGCTCCCAACCTTAGCACATCCTACTTCTGGGACTTTCTGGCTTCTGAAGACCTCCCAGAAACCCCTGCCGGACATTCTGATGGCCATCATCTGAAGTGACAGTTTGACCATCATCGGTGTGAGGCCAATGGAACTGCAGGGCTATGTCAGTTTCCAGCTTGAATCCGTGTCACTGCGATGAATGGACTGAAGATAAAATGGGCTCGTGGTGGCCTGGCTTGATGATGGACTGAGCCATCTGCCTTTCTTGAGCGACTCTTGTCCGCAACCTTTCTAGGGTCTTCCTTTCCTCCTTTTTGAGAAGAAAGAACTGGACCAGGGACTCTAGCATCACCACAGGAGACTATGTACTGTGACCTGGGGCCAATTTTCATGACAAAGAATCCCAGACTCATACAACTGTAAAATTGTTAAGTGTGCCATAGGACTTTTGTGAGGCATAACAGAGGCATAACAAATGTGAAGTGTTCACCCAGCGTCTACCACCTAAGTGGTGCCGATCCCACGTCAGCAGTATACTGCCATATTCCTATGGCTTGAAAAGCTTACAGCATTATTTTTAAAATATCTTCATTATGTAACAGTGTGTAGGCTTATAGAACACATATGTCCCCAAATATATTTTGAATCGTTGCTCTTAAAATAATATCAGTAGGATGTGCAGAAGTTGCTACTGGGGCTTGAGGAAGCTGTCCTGAGAACCTCTTTGGAAAGCTAGTCTGAGCCTGGCCAATTCCGGGGCAATTCAGTCTATCTCCTGTAAGCTTGGCTCTTTGCACCTAAGTTTACACTTTGTCTAAGCAGCGTGTTTGATGCTGAGGCCCTGCTCTCCTCCTGGGAGGCTGAACTCCCAGACCTTCGAGAAACAGAGGGCAGGCACAGAGCCCCTGGTGTGTGGGTTCCAGATAACAACTTCTTACAGGCCATGAGATCCATTCCCTGGGTCAGGAACATAGCCATTATGACACGAAGAAAACTCATGGGAAGTCTGCACAGGTTTCCTGTGTCTTCCCACCATGGCTTCTCCCCTTGGCTGATCTTGCTCTGAATCTCCTCAGTGTGGTCTATCCTAGTCATGGTTTTGACTGTAAAGCCACACCCTTGTAGTAGTTGATAACCTTGGCCATTATCTTGGGGACCTCAAAACAAAGGGACAAAGGTCAGAGCAGGAAACACTGTGTGTTCTCTGTAGCCACAAATTTTTAAAAGCTAGAAGGAAGTCCATTGAATATTTGGACCCCTGGGGCAGTTTGCTAACATCCCATTTTCTAAAATAGACATACATACATACATACATACATACATACATACATACATGATTATAGATAGAGAGAGAGATAAAAGGTAGATAGATATATAGATTAGATAGATAGATAGATAGATAGATATAAGGTAGTTAGATAGATAGATAGATTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAAAAGGTAGTTAGATAGATGATAGATAAATAGATTAGATAGATAGATAGATACATACATACATACATACATACATACATACATAGGTACAAAGATACATGGATAGATAGATAATAGGTTGGTAGATAAATACATAGATACATAGATGATAGATAGGTAAATAGATGGCAGATTAGATAGATAGATAGAAGGTAGGTAGATTGATTGATAGATAAATAGATAGATGATAGATTAGGTAGCTAGATAAATAGATAGATGATAGATTAGATAGATAGATGATAGATTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGATAGATTAGATAGATAGAAGGTAGATAGATAGGTAAATAGATGATAGATTAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGATAAGATAGATGATAGACAAATGATACAGCCTTTTGTTTTGTTGTTGTTGTCATTGTTGCCATTGTCCTTTTTGTTCCTCTGTTTGTTTGTTCTAAGACAAGGTCTCTTGTAGCCCAGGTTGGCCTCTAATATCCTACATAGCTGAGGATGACCTTGAACTTCAAATTCTCCTGCCTCCACTTCCTCAGTGCATCACCATGCCTGGCTTATGGAGAACTGAGGGTCAAACCCAGGGCTTCATGCATGGTAGGAAATCACCATACTGGCCAAACCACCTCTCTCTACCTCCTACTCTCATCCTCTTCAGGAACAGGTCTTGATATGTTGCCTTTTTAGTGGAGAGAAGTTAAGCTTTCTTAGTACATCTCAGTGCATCTCTCATGTGTTGCTTTTAG
Seq C2 exon
GAACAATAGAAATCAGTCCATAATCGTGAGTGGAGAATCAGGAGCCGGGAAGACTGTCTCTGCACGCTATGCCATGAGGTACTTCGCTACCGTCAGCAAATCGAGCAGCAATGCCCATGTGGAGGACAAAGTCTTGGCATCCAATCCCATAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033590:ENSMUST00000036555:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.084
Domain overlap (PFAM):

C1:
PF0006316=Myosin_head=FE(25.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(28.0=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types