MmuINT0104501 @ mm10
Intron Retention
Gene
ENSMUSG00000033590 | Myo5c
Description
myosin VC [Source:MGI Symbol;Acc:MGI:2442485]
Coordinates
chr9:75246138-75249889:+
Coord C1 exon
chr9:75246138-75246282
Coord A exon
chr9:75246283-75249732
Coord C2 exon
chr9:75249733-75249889
Length
3450 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
3' ss Seq
CTCTCATGTGTTGCTTTTAGGAA
3' ss Score
10.82
Exon sequences
Seq C1 exon
GAATCATTTTGGTGGCCATGAATCCTTACAAACAGCTACCAATATACGGGGATGCCATCATCCACGCCTACAGCGGACAGAACATGGGTGACATGGACCCACACATCTTTGCGGTTGCAGAGGAGGCCTACAAGCAGATGGCCAG
Seq A exon
GTAGTTTGCTGCCAGACCGGCCTTCCTCGGCTCTTCCTCTCTCTGCCTCTACTCTCTCTGCCTCTGCTCAGCCCTCACAGTGAAAGGAAGCTGTTTTGAGCTCAGAAGTCAGGTCTGTGTTTCCCTGCAGCCCGTTTGGCTGGGGGAGGACCTAGTGACTCTGCAGCGTGAGATGTCTGTGGTTTGTGGTCTGGTTTTGATCCAGTTTAAGGAGGCAGCCTCACTGCCAGCTAAGCACAGGTTCTAGCCACAGGTTTGGATTTTAACCTGGTGCCCTCACCTCGCTTTTGCATGACCCTGCAGATTTTGCTACTGGACTTTTACAAAAATCCTCTTGCAACAAAAGCACTGGGTTCACACTTCAAGCATCACCTTGGTACCCACAGGGCAGCCTGTGATATCCATGCCTTTCCACAGTAACCTAACCCCTGGCATATGCAGTAGGCTAAAGAGAGAGCTGGGCTTTGGGCCCAGATCTTCATGATTCTAGGTGTAAGTTATTTCTCTCATGACTGTCCTCTTGTCATTCTATTGCCCTTGTCTGTAGGATGCTGGAGAATAAAAACACCATCCTAAATTTGTCAAAAACTTTACAGCTTGCAAAAGAATTCTCACACCCAGCGGTCTCCTTCAGGTTTTGCCACACTCCTACAAAGTTCACTGTACTGCTATCTTTCTTCCCATCTTGCATAAGAAACTGAGGCATGGGCTCAGGACTTGCCTCATAATTCTGGGTATAGCGACTGAATAGTCTTCATCTGTGAGGCAGACTCTGGCAGGCTCATTTATGCGCAAGGGAGCCATAGTGATGCAGTAAACAAGACATGGTTTAACAGGGAAGCCTAATGGGCAACCTGAGGCTAAATTTCACTTCTTTCAAGTCATCAGGGACTGAATGATGCCTGCCCCCATCCCTTAAGGGAGACCCATAGCCTCAGGGTCAAGCTGTCTCCTCCATACCCTACTTCACACGGACTAAGAGAAGGGACTGTCCTCCAGATGATAGAGCCCCTACAGAGCAGCATTGCTCGTGGGACATACCCACATGGCCAGATAAGGCTGGCCTACCCTTTGACCATGCCAGTAGCTCAGCCTCTCACAATGGGGTCACGTTCCCAAGAAGGCAAAAAGGATGGATGTCTGAGATGCAGTAAGATTGCTCCCAACCTTAGCACATCCTACTTCTGGGACTTTCTGGCTTCTGAAGACCTCCCAGAAACCCCTGCCGGACATTCTGATGGCCATCATCTGAAGTGACAGTTTGACCATCATCGGTGTGAGGCCAATGGAACTGCAGGGCTATGTCAGTTTCCAGCTTGAATCCGTGTCACTGCGATGAATGGACTGAAGATAAAATGGGCTCGTGGTGGCCTGGCTTGATGATGGACTGAGCCATCTGCCTTTCTTGAGCGACTCTTGTCCGCAACCTTTCTAGGGTCTTCCTTTCCTCCTTTTTGAGAAGAAAGAACTGGACCAGGGACTCTAGCATCACCACAGGAGACTATGTACTGTGACCTGGGGCCAATTTTCATGACAAAGAATCCCAGACTCATACAACTGTAAAATTGTTAAGTGTGCCATAGGACTTTTGTGAGGCATAACAGAGGCATAACAAATGTGAAGTGTTCACCCAGCGTCTACCACCTAAGTGGTGCCGATCCCACGTCAGCAGTATACTGCCATATTCCTATGGCTTGAAAAGCTTACAGCATTATTTTTAAAATATCTTCATTATGTAACAGTGTGTAGGCTTATAGAACACATATGTCCCCAAATATATTTTGAATCGTTGCTCTTAAAATAATATCAGTAGGATGTGCAGAAGTTGCTACTGGGGCTTGAGGAAGCTGTCCTGAGAACCTCTTTGGAAAGCTAGTCTGAGCCTGGCCAATTCCGGGGCAATTCAGTCTATCTCCTGTAAGCTTGGCTCTTTGCACCTAAGTTTACACTTTGTCTAAGCAGCGTGTTTGATGCTGAGGCCCTGCTCTCCTCCTGGGAGGCTGAACTCCCAGACCTTCGAGAAACAGAGGGCAGGCACAGAGCCCCTGGTGTGTGGGTTCCAGATAACAACTTCTTACAGGCCATGAGATCCATTCCCTGGGTCAGGAACATAGCCATTATGACACGAAGAAAACTCATGGGAAGTCTGCACAGGTTTCCTGTGTCTTCCCACCATGGCTTCTCCCCTTGGCTGATCTTGCTCTGAATCTCCTCAGTGTGGTCTATCCTAGTCATGGTTTTGACTGTAAAGCCACACCCTTGTAGTAGTTGATAACCTTGGCCATTATCTTGGGGACCTCAAAACAAAGGGACAAAGGTCAGAGCAGGAAACACTGTGTGTTCTCTGTAGCCACAAATTTTTAAAAGCTAGAAGGAAGTCCATTGAATATTTGGACCCCTGGGGCAGTTTGCTAACATCCCATTTTCTAAAATAGACATACATACATACATACATACATACATACATACATACATGATTATAGATAGAGAGAGAGATAAAAGGTAGATAGATATATAGATTAGATAGATAGATAGATAGATAGATATAAGGTAGTTAGATAGATAGATAGATTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAAAAGGTAGTTAGATAGATGATAGATAAATAGATTAGATAGATAGATAGATACATACATACATACATACATACATACATACATAGGTACAAAGATACATGGATAGATAGATAATAGGTTGGTAGATAAATACATAGATACATAGATGATAGATAGGTAAATAGATGGCAGATTAGATAGATAGATAGAAGGTAGGTAGATTGATTGATAGATAAATAGATAGATGATAGATTAGGTAGCTAGATAAATAGATAGATGATAGATTAGATAGATAGATGATAGATTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGATAGATTAGATAGATAGAAGGTAGATAGATAGGTAAATAGATGATAGATTAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGATAAGATAGATGATAGACAAATGATACAGCCTTTTGTTTTGTTGTTGTTGTCATTGTTGCCATTGTCCTTTTTGTTCCTCTGTTTGTTTGTTCTAAGACAAGGTCTCTTGTAGCCCAGGTTGGCCTCTAATATCCTACATAGCTGAGGATGACCTTGAACTTCAAATTCTCCTGCCTCCACTTCCTCAGTGCATCACCATGCCTGGCTTATGGAGAACTGAGGGTCAAACCCAGGGCTTCATGCATGGTAGGAAATCACCATACTGGCCAAACCACCTCTCTCTACCTCCTACTCTCATCCTCTTCAGGAACAGGTCTTGATATGTTGCCTTTTTAGTGGAGAGAAGTTAAGCTTTCTTAGTACATCTCAGTGCATCTCTCATGTGTTGCTTTTAG
Seq C2 exon
GAACAATAGAAATCAGTCCATAATCGTGAGTGGAGAATCAGGAGCCGGGAAGACTGTCTCTGCACGCTATGCCATGAGGTACTTCGCTACCGTCAGCAAATCGAGCAGCAATGCCCATGTGGAGGACAAAGTCTTGGCATCCAATCCCATAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033590:ENSMUST00000036555:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.084
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(25.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(28.0=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types