GgaINT0029264 @ galGal3
Intron Retention
Description
NA
Coordinates
chr10:10095081-10095870:+
Coord C1 exon
chr10:10095081-10095225
Coord A exon
chr10:10095226-10095713
Coord C2 exon
chr10:10095714-10095870
Length
488 bp
Sequences
Splice sites
5' ss Seq
AAGGTTCAG
5' ss Score
2.52
3' ss Seq
CTCTGATGATTTGGTTTCAGAAA
3' ss Score
6.4
Exon sequences
Seq C1 exon
GAATAATTTTGGTTGCAATAAATCCCTATAAGCAGTTGCCAATATATGGAGATGCTATTATCCACGCATATAGTGGGCAAAACATGGGGGACATGGATCCTCATATATTTGCCGTGGCAGAAGAAGCATACAAGCAAATGGCAAG
Seq A exon
GTTCAGTGTGCTGTTTTACTGCAATAAATAACACTCAGTCAAATAGCAGTCTGCTAATTGTAATTTAGATTAACTGTGTGTGTGCCATTGGCTATCATGAATACCTCTGAATGTGTAACTTAACTAAACTAGAGAAGGAATAACTCCTCAACCAGCTGCAGGATTTGGGATTGGAAGTAAATGGCCTTTAAGGTCCACTCCAACCTGGGCAGTTCCGTGATTCTTTGATTTCTGTAACTTGGAACCGTTTTCATTTCTGACAAGGGCCAAAACTGTCTTAGCTGTGTGAGCAGCAGTGACATTGGCCTGGAGGTCACAGCCAAAGAGGTGTGAAACAGAAGAGCAGATGAAAGGTGGAACTCATACGAGTTGACCGCAGTTGTGTTTTCATACCTCTGTTTCATATGTATAACTCTTTCATATATTTGCACACATATGCATGCATTTCAGACACTTCTGATTTAAACCCTCTGATGATTTGGTTTCAG
Seq C2 exon
AAACGGCAAGAATCAGTCTATTATAGTCAGCGGAGAATCAGGAGCTGGAAAGACTGTGTCTGCAAGATACACTATGAGATACTTTGCCACCGTGAGTAAGTCGAGCAGCAATGCACACGTGGAGGATAAAGTTCTGGCATCCAATCCAATCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641:ENSGALT00000007393:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(22.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(24.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTTGCAATAAATCCCTATAAGCA
R:
CTCAGTGATTGGATTGGATGCCA
Band lengths:
294-782
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]