HsaINT0108865 @ hg38
Intron Retention
Gene
ENSG00000128833 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr15:52275562-52279017:-
Coord C1 exon
chr15:52278873-52279017
Coord A exon
chr15:52275719-52278872
Coord C2 exon
chr15:52275562-52275718
Length
3154 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
3' ss Seq
AAAACTTTTATTTGCTTTAGAAA
3' ss Score
6.49
Exon sequences
Seq C1 exon
GAATCATTTTGGTGGCCATGAATCCTTACAAGCAGTTGCCAATATACGGAGATGCCATCATCCACGCCTACAGCGGGCAGAACATGGGCGATATGGACCCACACATATTTGCCGTGGCAGAAGAGGCATACAAGCAGATGGCCAG
Seq A exon
GTAGCTTCCTGCCAAGCTGGACTTCCCCTTGCTCTGCCAATGCTCCCTGCATTTGCCAGACCATCACAGTGGAGGGGAGATATCTAGGTTGGGCTCATTAAAAGAGATAGGCCAGAGGTGGTGCTTTGTTGAGCCGACTACCTGGAATGAATAGCAAACGACTGTTCCATGTACCTGACCTGTCAAGACTGGAGTTTCCTGGGTTTTGTTCCTTCAAGGTAGTCAAGTCAGTCCTACCAGTCTGGGAATAGCAGATGCTTTTCTTGCAGTGTGTTTGGTTGGAGGAGTGTTGATTTATTCTCTGCTATGAGACGTTTAAGCTTTTTTTTTTTTTACCCATTGCAGGAAGTAGGATCTGATGACAGGGTTTTTAGCTGCAGGAGGTTTTAGGTGCAGGAGACATGGAATTTTATCCTAATTTCACTGCTAGGTGTTTGTAGGGCCCTGTGGAGTTCTCGTTTCACTAGTGCACATGTATGAAAAGCCTCCTGTGAATGAGGCACCGTGCACACATTCCCATGTGTCATCTGGGATGGCCTCAGAATAGCCCACGATGCAAATGTCTGGGCAGTAAACAGCTTCAGGGAATAACCAACCCAGGGTAGGCAGCAAGTAAAAGGCAGATCTGGGATTTGTGCTCAGATTTTTAAACTCTAGTTTATTTTTCCCATAACTATCACTTTTGGCTTCAGTGTCTTCATCTGTAAAGTATGGAGAATAGAAACACCACCCTATCTTTGTAGCTGCCTTTACAGTTTGCAAAAGAACTTTCACATACAGTGGTCTCCCTTGAGTCTTACAGCACTCCTGTGAAGTTGACTGACTTCATTGCCCTCATTTCACAGATGGGAAATCTGAGGCACAGGACCTGGACCTGCTGACTCTTTACCTAAATCTTTACTGCATAACCCCAGCCGCAGCTCCTGAGCTCCCTCCGCTTTATGTCTTCGTCTGTGAGCTGGACTCTCAGAGGGCACCCATTCCTGGTTCTGATGCTTATAATGAGGGAGCAGGTGGTGCTTACATGAGGTAGAACACGTGCTGCTTTCCTGCACAGATGTCTGATGGGCAGTCTGGGGCTAGACCGAGCTTCTTCAGAGTCATCAGAGACCCGGTGCCGTGCAGCTCCCTGTCCCTGGGGTGGGGCCGTCATCCTCAGGGACAAGCCAGTTCTCACCTCTGTCTTCCATATTCTAGGTAACAAGGCATATGAGGGGAAGGGTATGGCCCTCCAGGTTAAGGAGACTCTCTGGAAGCCCCACAAAGCACTTCTAACAGCTCGTCAGGCAGACCTCACTCACATAGGGAGGCTGGGATGTGCAGTCTTTCAAATGCACAGAGGGGCACTGCCTGGCCACTGGGGCCTAGTCCCTAAGAAGGAAGAGGAGAATGCAAATGCATACTGGGTAGAGAATTAGCAGCTTCCGCTGCACCAAGATTCCTTCTAACCCTAAAACCCCTGTGGTTCTGAGATTTTTCCCTGGCTCCCTGTAGGTCTCCCAGGTATCGTGGTGATTAGGGACTGGGTATGGGTGGGATGAGCTCTTTGGCACTGTAGGGCTGTGCTCACTTCAGCCCTAAAGAGCCAGTTTCTCCTTGGAGGTCTGTCTGTGTAACTGCCATAACAGAACGGAGCCCAAAGCAGGCTCGTGTTGGCCTTGTTTGATGCTAGACAGGTAGTGTCCCTCAGGGCTGTAGAACAGGGCTGGGATTACTAAAGCCCTGTTCTATGCCCTGAGGGACACTGAGCATGTCATTTCACTTCTCAGAGTCTTCATCTTCTCTCTTTGAAATGAAAATATTGGACCGGGGCTCTGTATCCAAAGTCTCCTCTAGCATTTACATGGGAGGCTGTGGCTCTGTGCTCTGGGTCAAGTCACTCCACCCCTGAGTCACCATTTTACTCTTCTGTAAAAGAGATATCTATGTCGTAGGATTTTTGTGAAGCTTAAATGAGAATCTGTATTCACCCAGCACCTGGCATGTGAGCGGTGCCACATCCACAGAGCCATGTTAGAAGCTTCCACCATCACAGTCTTATGACATGAAAAGTTTAATGCATTTTTAAAAAATCTCTAAATTATATAACAGAGCATGTTGGCTTAGAGAGCGCATATGTTCCCAAGCATCTTTTGAATAATTGCTCTCAAAATAATGTCCTTGAAATGTTTTTATATTTAAGTGGGATGTGCAGAAAGGAGTTGACATAAGGCCTGAGGCTGCTATCTTTAGAGGCCTGCTTGCAAGGTGGCCCATGGCTAGCCTCTGATTTCATGACGGTTCCTGACATTTCTTGGTTGAAAAAGTGGCTCATTTTACCTAAACTCAAGCTGTTTGTGTAAATAATGTGCTTTATGCTGAATACGTGCTTTCCTTCTGGGAGTCTGGAATATTGGCATATGCTAGGCAGAAGGTGGGCACTGCATCTCTAATGAGCTTCCCTGGCAGCCAGCATTTCACATGTGCTGTCAAATTCCTTGCTGGAAGAATTGAATGTGTCCTGTGTGACCCGACTGGGAGAGGACCCCTGGAAGTTTGCACCCGTGTTCCACTGGACCTTGCCCCGTGTGCCTTTTCCCCGTGCTGCTTTTGCTGTGTATCCTCTTGCTGCAATCAGTCTTAGCTGTGAGGATGACTATATGCTGAGTCCTGAGAGTCCTCTTACTGGGTCATTGAACCTGAGGTTGGTCTTGGGGCCCCTCAACATGGTACTCAATAAATACATGTTGACAGGCAGCATGATGACCTACACAGGGTCCATCTAGAAAGAGGGTGCTCAGGAGAGGGTGGGGAAGGCAGAGGAGAGATGAAATGAGAGGTGAAATTCAAGAACAGAGTTTAAAAGCAAAAATCCTGCCCAGAGAGTGGGAAGGATGGGAAGGAGCAGTTTTTTGGTTGAGTGGAAAGGTTGAGTAGGGAAGCAGTAAGGAGTAAGGATTTGAATAAGGTTGGATGAAAGATGTGAACTTTTAAAATTGTGTGTTCTGCACGATCACATAGAAAAAAAAATCTAGAAGGAAATTGATTGAGATTTAAAAATAGTAGAGTGACAAAACAGTTTCCCTCTTTTGTCTTGTCCACATTTGTCTTAATTAGCACATGTTGCCTCTTTAATGGGAAGAAACTAATATTTGAAAACTTTTATTTGCTTTAG
Seq C2 exon
AAACAACAGAAACCAGTCCATAATTGTAAGTGGGGAGTCAGGTGCTGGAAAGACAGTGTCGGCTCGCTATGCCATGAGGTACTTTGCCACCGTCAGCAAATCGGGCAGCAACGCTCACGTGGAAGACAAGGTCCTGGCATCCAATCCCATCACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128833:ENST00000261839:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.112
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(39.6=97.7)
A:
NA
C2:
PF0006316=Myosin_head=FE(10.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development