MmuINT0104490 @ mm10
Intron Retention
Gene
ENSMUSG00000033590 | Myo5c
Description
myosin VC [Source:MGI Symbol;Acc:MGI:2442485]
Coordinates
chr9:75244970-75246282:+
Coord C1 exon
chr9:75244970-75245135
Coord A exon
chr9:75245136-75246137
Coord C2 exon
chr9:75246138-75246282
Length
1002 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
CACTTCACCTCTTTCCTCAGGAA
3' ss Score
9.02
Exon sequences
Seq C1 exon
GAGCTGGAATACCCTGTTGACCCAGGGTCACTGCCTCCGCTTCGGAACCCTGACATCCTGGTGGGTGAGAATGACCTCACAGCCCTCAGCTACCTCCATGAGCCCGCAGTGCTGCATAATCTCAGAATCCGCTTCGCAGAGTCCAAACTCATCTACACCTACAGTG
Seq A exon
GTAAGGATACAGTACGACACCCTCACCCCCAGGCCTACCGTCTGCGTGCCCCGAGCACTCTCGATGCTGAGTGTTGAGAGTGTGTGTAAAAAGAGGTGTCTGTGTAAGGAGAACTGCTCGTGGGAACGAAGATGGACTAGGAGGAAAGATCACCATGGGCTCGTGTCTGAGTCTCTCACCACATCCAACACACTTATTACTTCTTGGGACATTGTTGTCATTGTTACATTTACGTTGGGACTTTCAAAAACGCAGTTCTTTTCCCCATGTGTCACCCCACCCAGACATCAGAACAGCCTTAGAGGAAGGTGACTGTCAGATAACCGAGATTCAGAGCATTGAGTGACTGGACCCAGGTCAAGCACAAGCTTTCAGTGAAGAACTGGAGAGGCAGGTGGATCTCTGAGTTCGAGGCCAGCCTGGTCTAGAATGAGTTCCAGGACAGCCACGGCTACACAGAGAAACCCTGTCTCGACAAACCAAAAAAAAAAAAAAAAGAATTTAAAAAGAACTGGGACTTCTGGAAAAAGCCTGTGGGGGGCGGGTGTCTTCTTCTATTTTCTGTTGCTGTAATATAGAATATCTGAGACTAGATAACTAACAGAGAACAGAAGTTTGGTTCGTGGCTCTGGAGGCTGAAGAACACTGCTGGCACCTACTAAGCACCTGGTGAGGGTTTCCTGATGTGAGGCAGAGCAGGTGTACAGATGCCAGTCTCTGTGGGGTCCCCAATCCTCAGGACCAAAGACGGATCTCCAAGTGCTAGTAACATGTGAAGGGTGAGCAGTAAGTTCCCAGCCCACTGACTGCTGGAAGGACAACCGTGGATAGGGGAGGTCCCTGAAACCAAAGGCCAGCCATCTTGATTATGTTCCATAACCTATGTGCATCAAGAGTTTGACATAAAAAGAAGGTGTATTCAAGGGGGAGGTCACCCGCAAAGGAGCGGCTGGGATAAAACTCCAGGCGAGTCTGCTAACCGCACTTCACCTCTTTCCTCAG
Seq C2 exon
GAATCATTTTGGTGGCCATGAATCCTTACAAACAGCTACCAATATACGGGGATGCCATCATCCACGCCTACAGCGGACAGAACATGGGTGACATGGACCCACACATCTTTGCGGTTGCAGAGGAGGCCTACAAGCAGATGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033590:ENSMUST00000036555:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(17.7=58.9)
A:
NA
C2:
PF0006316=Myosin_head=FE(25.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGAATACCCTGTTGACC
R:
CTGGCCATCTGCTTGTAGGC
Band lengths:
310-1312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types