Special

HsaINT0108854 @ hg38

Intron Retention

Gene
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr15:52278873-52279674:-
Coord C1 exon
chr15:52279509-52279674
Coord A exon
chr15:52279018-52279508
Coord C2 exon
chr15:52278873-52279017
Length
491 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
CATCTAACATCTTTCCCCAGGAA
3' ss Score
9.09
Exon sequences
Seq C1 exon
GAGCTGGATTATTCTGTCAATCCAGAATCTCTGCCTCCACTTCGGAATCCTGACATCCTCGTGGGCGAGAATGACCTCACGGCTCTCAGCTATCTTCACGAGCCCGCGGTGCTCCACAACCTCAGAATCCGCTTTGCAGAATCCAAACTCATTTACACCTACAGTG
Seq A exon
GTAAGGAGAGCAATTCTAGGAAGTAAGGAATGGCACTGGAATGTAAGCTTGCTGTCTAGAGCCTCCTGGTTGTTTTATGTTTATACTGAGCACCCAGAGTTTGTTGTAAAAAGAAGTGTCTGGGTGGGGAGAATCTTCAACAAGAACTAAGACTGGACTACCTAGAAAAAGAGATGTAACAAAGCTCGTGTTTGAGTTTCTCATCAGATTTCATACATTTATTACTTATTTTGGGCAATGATATTACTTACACTGCAAATTGCAAAAACCTCTCCATTTGCGAGCATTTCCACCTGTCCTGTCAACCAACCGTCAGAACAGCCCGAGGGTGTAGGTGACTGGCAGGGAATTAATTCAGTGCGTGAAGTGACTTGCCCAAAGTCACACAGAAGGTTTAATAAGCGACAGAGCTGGGGTTTCTTAAAAAAAAAAAAACTGGAGATGCAGGTGGCAGTAAGAGTATTTTAACTGCATCTAACATCTTTCCCCAG
Seq C2 exon
GAATCATTTTGGTGGCCATGAATCCTTACAAGCAGTTGCCAATATACGGAGATGCCATCATCCACGCCTACAGCGGGCAGAACATGGGCGATATGGACCCACACATATTTGCCGTGGCAGAAGAGGCATACAAGCAGATGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128833:ENST00000261839:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.036 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0006316=Myosin_head=PU(22.8=58.9)
A:
NA
C2:
PF0006316=Myosin_head=PU(39.6=97.7)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
ALTERNATIVE
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGATTATTCTGTCAATCCAGA
R:
CTGGCCATCTGCTTGTATGCC
Band lengths:
310-801
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development