RnoINT0097314 @ rn6
Intron Retention
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82185240-82186459:+
Coord C1 exon
chr8:82185240-82185405
Coord A exon
chr8:82185406-82186314
Coord C2 exon
chr8:82186315-82186459
Length
909 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
3' ss Seq
CACCTCACCTCTTTCCTCAGGAA
3' ss Score
8.93
Exon sequences
Seq C1 exon
GAACTGGATTACCCTGTGGACCCAGGGTCACTGCCTCCGCTTCGGAACCCAGACATCCTGGTGGGTGAGAATGATCTCACAGCCCTCAGCTACCTCCATGAGCCCGCGGTGCTGCACAACCTCAGGATCCGCTTCGCAGAGTCCAAACTCATCTACACCTACAGCG
Seq A exon
GTAAGGATCCAGTGTAGCCCCGAGGCTGTCTGCGCGTCCTGAGCACTCCGACGCTGAGCGTTGAGAGTGCGTGTGAGGAGTGTCTATGTGCGGAGAGCTGCTCGTGGGAATGAAGATGCGCTACGAGGAAAGATCGCCATGGGCCTGTGTCTGAGTCTCGCACCACATCCAACACATGTATTACTTGTTGGGACATTGTTGTCATTATTACGTTTACGCTGGGACTTGCGAAGACGCAGTTCATTTCCCCACGTGTCACCCCATCCCGACATCAGAACAGCTTTAGATGAAGGGGACTGTCAGATAGCCAAGATTCAGAGCATTGAGTGACCTGACCTAAGTCAAGCAAAGGCTTTTAGTGAAGAACCGGGCCTTCTGGAAAGAGCCTGCGGGGGTGGGTGTCTCCTTCTGTTTTCTGTTGCAGTAATAGAGAATATCTGAGCCTTGATAACTTACAAAGAACAAAAGTTTGGCTCATGGCTCTGGAGGGTGGGAAGCTTAAGAGCTGGCGCAGTCACCCTCTGAGCATCTGGTGAGGGTTTCCTGACGTGAGACAGAGCAGGTGTACGGATGCGAGTGTCTTCCACACAGGCTGCCATGGGGTCCCCCCGATCCTCAGGACCTCATCCATGTTAATAACTTTCCCAAGACGGATCTCCAGGTGCTATTAACATGTGAAGGGTTGGCAGTAAGTTCCCAAACCACTGACTTCCGTGGATAGGGGAGGACCCTGAAACCAAAGGCCCGCCATCTTGATTATGTTCTGTAACCTATTTGCATATGCGTCAAGAGTTTGACATAAAAAGAAGTATGGATTCAAGGGGGGTCACCAAGGAGGGGTCACTCATGAAGGAGCAGATGGGATGAGCCCCTTCAAGTCTGCTAACCACACCTCACCTCTTTCCTCAG
Seq C2 exon
GAATCATTTTGGTGGCTATGAATCCTTACAAACAGCTGCCAATATATGGGGATGCCATCATCCACGCCTACAGCGGACAGAACATGGGCGACATGGACCCACACATCTTTGCGGTTGCAGAGGAGGCCTACAAGCAGATGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356:ENSRNOT00000011768:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(15.2=58.9)
A:
NA
C2:
PF0006316=Myosin_head=FE(22.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGGATTACCCTGTGGACC
R:
CTGGCCATCTGCTTGTAGGC
Band lengths:
310-1219
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]