BtaINT0098221 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003763 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:58275970-58276719:+
Coord C1 exon
chr10:58275970-58276144
Coord A exon
chr10:58276145-58276638
Coord C2 exon
chr10:58276639-58276719
Length
494 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
ATCTTATGCATTGTTTGCAGATC
3' ss Score
8.89
Exon sequences
Seq C1 exon
GTGCAACATCAGTTACTTAGAAGAATGGCTTAAAGATAAGAATTTACAGAACAACTTGGCCAAGGAAACTTTGGAGCCTCTCTCACAGGCAGCATGGTTGCTTCAGGTGAAGAAGACCACCGACAGTGATGCCAAGGAGATCTACGAACGCTGTACCTCCCTGTCTGCTGTGCAG
Seq A exon
GTAATCAGGTTTGTTCAGTGTCTCCCTGATCTTCACCAGTGATCATGTGACTGGCATCCCCTTTCCTGGCTTAGCTGGCATGGGGTGCATCTGCATCTCTGTGTGCTCTTTGGCCTACCCACTTATCTAACAAGCATTTATTAAACAGTAACTCTAGACCTTGAAAACCTAAAAGTTCGTATGGCACATTCCCTGCCCACAAAACCACAGATGTGTGTGTGTGTGGGGAGAGGATGTAGGACTGGAGAAGGAGGCTGGAAATGGGGAATTGTCTCACAGTCATCTAATTATATGATGTCCTTGCTCCCATCTATGCTCTTCTCAGCTTGTTTTCTCTCTTCTTGGGGAAAAAATAACACATGGTTCCTAGAGCCAGATTACAGTATTAAAGAACCACTTGTGGTTCCCAGCTGTTCCCAGACCACTGGAACCATCATTTCATGGACAGAGTTATCCTTTTTGTGGCCTTATACTATCTTATGCATTGTTTGCAG
Seq C2 exon
ATCATAAAGATTCTTAATTCATACACACCTATAGATGACTTTGAAAAAAGAGTGACTCCATCCTTCGTTCGCAAAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003763:ENSBTAT00000004905:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0184314=DIL=FE(54.7=100)
A:
NA
C2:
PF0184314=DIL=PD(12.3=48.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAACATCAGTTACTTAGAAGAA
R:
GCACTTTGCGAACGAAGGATG
Band lengths:
254-748
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development