HsaINT0108864 @ hg38
Intron Retention
Gene
ENSG00000128833 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr15:52195377-52196483:-
Coord C1 exon
chr15:52196309-52196483
Coord A exon
chr15:52195458-52196308
Coord C2 exon
chr15:52195377-52195457
Length
851 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACC
5' ss Score
6.54
3' ss Seq
ATGTTATGTACCGTTTGCAGATC
3' ss Score
9.38
Exon sequences
Seq C1 exon
GTGCAATATCAGCTACTTAGAAGAATGGCTTAAAGATAAGAACTTGCAGAACAGCTTAGCAAAGGAAACTTTGGAGCCCCTCTCTCAGGCAGCCTGGTTGCTTCAGGTCAAGAAGACCACAGACAGTGATGCCAAGGAGATCTACGAACGCTGCACCTCACTGTCTGCTGTGCAG
Seq A exon
GTGACCAGGCTTGCTTAGTGTCTCCCTGGCTCTTCCCTGACACATCAGTGCAGTGGGCATTGCCTTTCTTGGTTTAGCCAGCTGTGGGCACCCTGATTCTGTGTGTACTCTCGGGAGCATACCTATCACCCATGGCCCACCCTTTTATCTAATAAATATTTATTAAATACTAACACTAGGTCTTAAAAACATAGAAATGGGCTGGGCGAGGTGGCTCACAGCTGTAATCCAGCACTTTGAGAGGCCAAGGTGGGAGGATTGCCTGAGCCCAGGAGTTTGAGACTAGTCTGGGCAACATAACAAGACGCTCTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCTGGGTGTGATGGCACACACCTTTGGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGGATCGCATGAGTCCAGGGGTTCGAGGCTGCAGTGAGCCATGATCATGCCACTGCACCCCAGCCTGGGCAATAAAGGGAGACCCTATCTCAAAAATAATAATAATAATAATCACACACACACATATACACAAATGTCTATGATGCATTCATTCCCTGCCCATTAAACTCACAAATGTGTATGTGGAGGGGTGGCCATGTGGGAGGTGGGGAGGCTAGAAGGGGGCTCCTCTTACTGTTTTCTGATTATCTGATTTGCCTTTGCTCCCTAAGGCACTTTTCTCCCCTTGTTTTCTTTTCTTGGAAATAGGTAACATACAGTTCCTGAACCAAATTATAGGCTAAAAGAACCACCTGTGCTTCCCAATGGTTCCCAATAACCAGAACCATTATTTTATGAACAGAGTTATTATTTTGCATGGTCTAACACCATGTTATGTACCGTTTGCAG
Seq C2 exon
ATCATAAAGATCCTTAATTCATACACACCTATAGATGACTTTGAGAAGAGAGTGACTCCATCCTTTGTTCGCAAAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128833:ENST00000261839:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0184314=DIL=FE(54.7=100)
A:
NA
C2:
PF0184314=DIL=PD(12.3=48.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATATCAGCTACTTAGAAGAATGG
R:
TGCGAACAAAGGATGGAGTCA
Band lengths:
246-1097
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development