GgaINT1018800 @ galGal4
Intron Retention
Gene
ENSGALG00000004641 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:8362885-8363625:+
Coord C1 exon
chr10:8362885-8363059
Coord A exon
chr10:8363060-8363544
Coord C2 exon
chr10:8363545-8363625
Length
485 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
GTGTATTGTCATTTGAGCAGATA
3' ss Score
4.52
Exon sequences
Seq C1 exon
ATGTAATATCAGCTATTTGGAAGAATGGCTTAAAGACAAGAATCTTCAAAGCAGCAATGCCAAAGAAACTTTAGAGCCTCTGTCTCAAGCAGCCTGGCTCCTTCAGGTCAAAAAGATCACCGATGATGATGCCAAAGAAATATGTGAACACTGCACATCGCTTTCCACTGTGCAG
Seq A exon
GTAATGAACCATTTGTTTTATTCTGGCACCAACCCGCCTGACACAATTTGCTGCAAAGAGTTATTGGCCTTTCATTTGATAAAAACAGCATTCATCAGCTTTGTGCATCACCACTTATTAGATTTGCTTTTTTTTAACTCCTTATTTCCAACTGTTAATACTTTAACTGCTTCTGTGGTGAATACCTGTCTGCCTTCTTCTACCTCACTTCTTTATTCCACAGTGAGTATTTCTTTTTACTTTGTCAGAGGCGCTTTTGTTGTTTCCTTTTATCAGTTCCACATCTCCTTGATCCTGCTGTCAGCTTTGGAAATGAGTCATGGCAGTGATTGTGTATGCAAGAAATAATTAGGTGCCAGGTCGCAATTCTCACTTGATTGTAAAATTTCTTACTGAAAGTCCAATTAAATACCAATAAAGGTGGCATCTTAATGCTTTCTTTGCTTTTTGTAACATACTAAAATGGTGTATTGTCATTTGAGCAG
Seq C2 exon
ATAGTTAAGATCCTCAACTCATACACTCCAATAGACGATTTTGAGAAAAGAGTGACTCCGTCGTTTGTTCGCAAAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641:ENSGALT00000007393:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0184314=DIL=FE(54.7=100)
A:
NA
C2:
PF0184314=DIL=PD(12.3=48.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCAGCTATTTGGAAGAATGGC
R:
GACTTTGCGAACAAACGACGG
Band lengths:
248-733
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]