RnoINT0097324 @ rn6
Intron Retention
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82244325-82244974:+
Coord C1 exon
chr8:82244325-82244499
Coord A exon
chr8:82244500-82244893
Coord C2 exon
chr8:82244894-82244974
Length
394 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ATGCTCTGTAATGTTCACAGATC
3' ss Score
7.78
Exon sequences
Seq C1 exon
GTGCAACATCAGCTTCCTGGAAGAATGGCTAAAAGATAAGAATTTGCAGAACAGCTTAGCCAAGGAGACTCTGGAGCCCCTCTCTCAGGCAGCCTGGTTGCTTCAGGTTAAGAAGACCACAGACAGCGATGCCAAGGAGATCTCCCAGTGCTGTACTTCCCTGTCTGCCGTGCAG
Seq A exon
GTGAGTGGGCTGGCCTAGCTCCTCTCTGGACCTTGAAGGGCAGATCCTGAGGCATTTCCCAGCTTAGCCTGCTGTGCGGTGCAACTGACCTCCTGTGACTTCTCTTTTTCCTGATGACTATTTTGTATATATTGATTGCAGGCTTCAAGGCATAGATATGTACATGTGCACTAAACCGAGCAGGGGCTGGGAGGCTGGAAGGGGGGAGTCCCTCGCTCCCATCTGACCATGTGGTTAGTGTGGGCTGCACTCTGTACCCTATGCTGTTTTCTGTTCTCTTGGGATCATACAGCACATGGCTCCAGAGACAAATTATAGTTTAGAAGATTCACCCGTACTTCTTGGAGGCACCTAAATGTCCTTGGTCTGACCCCATGCTCTGTAATGTTCACAG
Seq C2 exon
ATCATAAAGATCCTTAATTCATACACACCTATAGACGACTTTGAGAAAAGAGTCAATCCATCCTTCGTTCGCAAAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356:ENSRNOT00000011768:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0184314=DIL=FE(54.7=100)
A:
NA
C2:
PF0184314=DIL=PD(12.3=48.1)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAACATCAGCTTCCTGGA
R:
GTACTTTGCGAACGAAGGATGG
Band lengths:
254-648
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]