BtaINT0098275 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57376008-57376811:+
Coord C1 exon
chr15:57376008-57376217
Coord A exon
chr15:57376218-57376607
Coord C2 exon
chr15:57376608-57376811
Length
390 bp
Sequences
Splice sites
5' ss Seq
GAGGTACCA
5' ss Score
6.43
3' ss Seq
AACCCGTCTCCTCCCTCCAGGAC
3' ss Score
11.88
Exon sequences
Seq C1 exon
GAGCGCCTGGCCCAGCTGGCCCGCGAGGATGCAGAGCGAGAGCTGAAGGAGAAGGAGGAGGCTCGGAGGAAGAAGGAACTCCTGGAGCAGATGGAGAGGGCCCGCCATGAGCCCATCAATCACTCGGACATGGTGGACAAGATGTTTGGCTTCCTGGGGACTTCGGGCGGCCTGCCAGGCCAGGAGGGCCAGGCACCTAGTGGCTTCGAG
Seq A exon
GTACCAGGCTGGGGAAGGAGCTGGGACAGGCCCTAGGTGGTTGCCTTCCCTCCCCTTGTGCCACTTTGTGTTAAAGTCCACCTGGTCCCCTCTGAGCGGAAGGCGGCAGTGATGATCTGGAACAGGGACCGCCGGTCCCAGGCCCTGTCCAGCCACCAGCCTGCAATGTGACCTTGGGCCAGCCACTGTCCCCCTCCAAGGCCATTCGCAAACCTTTTTTCGTTTGTGTGTTGAGGACCTACCATGTGCTGGGCTCTGTCTCGGGAGTGAACCGGGTGGACAGATCCCTGTGCTCCTGGAGCAGGAGCTGGCCCCTCAGGGACTGGCTGGGGGCCCCTAGCTCAGCCCCAGGTCTGCCCCCATGGCAGGGAACCCGTCTCCTCCCTCCAG
Seq C2 exon
GACCTGGAGCGCGGGCGGAGGGAGATGGTAGAAGAGGACCTGGATGCAGCCCTGCCCCTGCCCGACGAAGATGAGGAAGATCTCTCCGAGTATAAATTCGCCAAGTTCGCTGCCACTTACTTCCAGGGCACGACCACGCACACCTACACCCGGCGGCCACTCAAGCAGCCACTGCTGTACCACGATGATGAGGGTGATCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955:ENSBTAT00000005191:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.829 A=NA C2=0.485
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCTCGGAGGAAGAAGGAA
R:
CCCTCATCATCGTGGTACAGC
Band lengths:
347-737
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development