DreINT0101031 @ danRer10
Intron Retention
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3145109-3145734:+
Coord C1 exon
chr18:3145109-3145426
Coord A exon
chr18:3145427-3145530
Coord C2 exon
chr18:3145531-3145734
Length
104 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TCCAGTTCACTTTTCTTCAGGAT
3' ss Score
7.43
Exon sequences
Seq C1 exon
TACCGGCGACGTTTGGAGGCCGAAAAGTTGCGTCTGGCCGAAGAGCAGAAGCTCAGGAATCAAATGAGCGCCAGAAAAGCCAAAGAAGAAGCTGAAAAGATGCATCAGGAGAGATTGGCACAGCTGGCGCGAGAAGACGCCGAACGGGAGAAGAAGGAGCGGCAGGAGGCTCGCAGGAAAATGGAGATGTTGGACCAGATGGAGAAAGCCAGACAGGAGCCAGTCAACGATTCTGATATGGTGGACAAGATGTTCGGCTTCCTGGGAACCACAAACTCTTTCCCTGGTCAGGAAGGTCAAGCGCCTGCTGGGTTTGAG
Seq A exon
GTGAGGATGCGGATCTGACGCTTTTATAAATGAAACTAGTGTTTAGGAGTGTTTGAGTTCTTATGGCTTGTTGGAGACATTAGCTCCAGTTCACTTTTCTTCAG
Seq C2 exon
GATCTGGAGCGAACACACCGGGAGCTGGAGGTGGAGGATCTAGACGAGTCTCTTCCACTCCCGGAGGACGATCTGGAGGACCTGTCCGAGTACAAATTCGCCAAGTTTTCTGCCACATATTTCCAGGGCACGAGCACACACACGTACATGAGGCGGCCATTAAAACAGCCATTACTGTTTCATGAGGATGAAGGAGATCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871:ENSDART00000166980:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.717 A=NA C2=0.441
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCAGATGGAGAAAGCCA
R:
ATGTGGCAGAAAACTTGGCGA
Band lengths:
246-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]